View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21157_low_15 (Length: 250)

Name: NF21157_low_15
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21157_low_15
NF21157_low_15
[»] chr3 (14 HSPs)
chr3 (139-250)||(548385-548496)
chr3 (7-120)||(42656165-42656282)
chr3 (139-224)||(40131990-40132075)
chr3 (16-97)||(52040529-52040610)
chr3 (139-224)||(782838-782922)
chr3 (136-224)||(10018774-10018861)
chr3 (136-224)||(10256088-10256175)
chr3 (95-137)||(52040206-52040248)
chr3 (136-224)||(10123314-10123401)
chr3 (154-221)||(10744818-10744885)
chr3 (139-176)||(17743104-17743141)
chr3 (139-176)||(19044424-19044461)
chr3 (138-177)||(10661755-10661794)
chr3 (221-250)||(42656291-42656320)
[»] chr7 (4 HSPs)
chr7 (139-224)||(25432120-25432205)
chr7 (139-177)||(41832706-41832744)
chr7 (139-177)||(8083389-8083427)
chr7 (139-177)||(41830300-41830338)
[»] chr4 (4 HSPs)
chr4 (145-224)||(7785283-7785362)
chr4 (139-220)||(2547078-2547158)
chr4 (138-177)||(21215020-21215059)
chr4 (212-250)||(14781148-14781186)
[»] chr6 (4 HSPs)
chr6 (146-224)||(1136235-1136313)
chr6 (139-220)||(6825508-6825588)
chr6 (138-177)||(30689633-30689672)
chr6 (139-177)||(8655827-8655865)
[»] scaffold0655 (1 HSPs)
scaffold0655 (140-224)||(698-782)
[»] chr5 (6 HSPs)
chr5 (138-177)||(43233925-43233964)
chr5 (138-176)||(41949332-41949370)
chr5 (139-220)||(21254206-21254286)
chr5 (139-176)||(41951731-41951768)
chr5 (125-177)||(21256720-21256771)
chr5 (139-177)||(26873161-26873199)
[»] chr1 (2 HSPs)
chr1 (139-177)||(2427331-2427369)
chr1 (147-211)||(25189165-25189229)
[»] chr2 (5 HSPs)
chr2 (139-220)||(31269463-31269543)
chr2 (139-177)||(24038363-24038401)
chr2 (139-177)||(24039558-24039596)
chr2 (139-250)||(600485-600597)
chr2 (139-177)||(31180317-31180355)
[»] scaffold0959 (1 HSPs)
scaffold0959 (138-178)||(407-447)
[»] scaffold0023 (1 HSPs)
scaffold0023 (138-178)||(111543-111583)
[»] chr8 (3 HSPs)
chr8 (138-176)||(5690859-5690897)
chr8 (135-224)||(3567484-3567572)
chr8 (139-168)||(12464815-12464844)
[»] scaffold0862 (1 HSPs)
scaffold0862 (139-177)||(322-360)
[»] scaffold0525 (1 HSPs)
scaffold0525 (139-177)||(2028-2066)
[»] scaffold0005 (1 HSPs)
scaffold0005 (212-250)||(58544-58582)
[»] scaffold0001 (1 HSPs)
scaffold0001 (139-220)||(144661-144741)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 548496 - 548385
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgagaaagttagttacaa 238  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  548496 tgttagaaaacttggcatccatggaaggaatgagagaaatagatcaaagttcttagtattgatggaaaatgaatattacaaatgagaaagttagttacta 548397  T
Q  239 tgtgacacctta 250  Q
    ||||| ||||||    
T  548396 tgtgatacctta 548385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 42656165 - 42656282
Alignment:
Q  7 tccaagaatattcaaatttgaataagagtcatggagt---ataacctattggatacagttccaatgc-nnnnnnncggtgcctcattattactaccattt 102  Q
    ||||| || ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||        | |||||||||||||||||||||||    
T  42656165 tccaataacattcaaatttgaataagagtcatggagtataataacctattggatacagttccaatgcaaaaaaagcagtgcctcattattactaccattt 42656264  T
Q  103 ttcaatgctttattgtgg 120  Q
    ||||||||| ||||||||    
T  42656265 ttcaatgctctattgtgg 42656282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 40132075 - 40131990
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||  ||| |||||||||||||||||    
T  40132075 tgttatgaaatatggcatctatggaaggaatgagagaaatagatcaaagttttttgtattgataaaaattgaatattacaaatgag 40131990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 52040610 - 52040529
Alignment:
Q  16 attcaaatttgaataagagtcatggagtataacctattggatacagttccaatgcnnnnnnncggtgcctcattattactac 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||||||    
T  52040610 attcaaatttgaataagagtcatggagtataacctattggatacaattccaatgcaaaaaagcggtgcctcattattactac 52040529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 782838 - 782922
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    |||||||||||||| ||||||||||||||| |||||||||  | ||||  ||||||||||||| ||||  ||||||||||||||||    
T  782838 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaa-ctctttgtattgatagaaatggaatattacaaatgag 782922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 10018774 - 10018861
Alignment:
Q  136 tgttgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    ||||||||||||||||||||||||||||| ||| ||||||||   | ||||  ||||||||||||||||||   |||||||||||||||    
T  10018774 tgttgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaa-ctctttgtattgatggaaatgaaatattacaaatgag 10018861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 10256088 - 10256175
Alignment:
Q  136 tgttgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    ||||||||||||||||||||||||||||| ||| ||||||||   | |||| || ||||||||||||||||   |||||||||||||||    
T  10256088 tgttgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactt-tttgtattgatggaaatgaaatattacaaatgag 10256175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 52040248 - 52040206
Alignment:
Q  95 taccatttttcaatgctttattgtgggagttcttttttcattg 137  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  52040248 taccatttttcaatgctctattgtgggagttcttttttcattg 52040206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 10123314 - 10123401
Alignment:
Q  136 tgttgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    |||||||||||||||||||||||||| || ||| ||||||||   | ||||  ||||||||||||||||||   |||||||||||||||    
T  10123314 tgttgttaggaaacatggcatccatgaaaagaaggagagaaaactaacaaa-ctctttgtattgatggaaatgaaatattacaaatgag 10123401  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 10744885 - 10744818
Alignment:
Q  154 catccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaat 221  Q
    ||||||| |||||||||||||||||  |  |||| |||||||||||||||||| ||||||||| ||||    
T  10744885 catccatagaaggaatgagagaaatgtagtaaagctctttgtattgatggaaattgaatattataaat 10744818  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 17743141 - 17743104
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaa 176  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  17743141 tgttaggaaacatggcatccatgaaaggaatgagagaa 17743104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 19044461 - 19044424
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaa 176  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  19044461 tgttaggaaacatggcatccatgaaaggaatgagagaa 19044424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 10661755 - 10661794
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  10661755 ttgttaggaaacatgacatccatggaaagaatgagagaaa 10661794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 221 - 250
Target Start/End: Original strand, 42656291 - 42656320
Alignment:
Q  221 tgagaaagttagttacaatgtgacacctta 250  Q
    ||||||||||||||||||||||||||||||    
T  42656291 tgagaaagttagttacaatgtgacacctta 42656320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 25432205 - 25432120
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    ||||| ||||||||||||||||||||||||||||||||||  | ||||||||||| |||||||||||| |||||||||| ||||||    
T  25432205 tgttatgaaacatggcatccatggaaggaatgagagaaatgtagcaaagttctttatattgatggaaattgaatattacgaatgag 25432120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 41832744 - 41832706
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41832744 tgttaggaaacatggcatccatggaaggaatgagagaaa 41832706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 8083389 - 8083427
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  8083389 tgttaggaaacatggcatccatggaaggaaggagagaaa 8083427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 41830338 - 41830300
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  41830338 tgttaggaaacatgtcatccatggaaggaatgagagaaa 41830300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 7785283 - 7785362
Alignment:
Q  145 gaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    |||||||  |||||||||||||||||| |||||||  |||||| |||||||||||||||||| |||||||||||||||||    
T  7785283 gaaacattacatccatggaaggaatgaaagaaatatgtcaaagctctttgtattgatggaaattgaatattacaaatgag 7785362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 2547158 - 2547078
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaa 220  Q
    |||||||||||||| ||||||||||||||| |||||||||  | ||||  ||||||||||||| ||||  ||||||||||||    
T  2547158 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaa-ctctttgtattgatagaaatggaatattacaaa 2547078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 21215059 - 21215020
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  21215059 ttgttagtaaacatgacatccatggaaggaatgagagaaa 21215020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 14781148 - 14781186
Alignment:
Q  212 tattacaaatgagaaagttagttacaatgtgacacctta 250  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  14781148 tattacaaaagagaaagttagttacaatgtggcacctta 14781186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 1136235 - 1136313
Alignment:
Q  146 aaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    ||||||| |||||||||||||||||||||||||| | ||||  ||||| |||||||||||| |||||||||||||||||    
T  1136235 aaacatgacatccatggaaggaatgagagaaatatagcaaatctctttatattgatggaaattgaatattacaaatgag 1136313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 6825508 - 6825588
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaa 220  Q
    |||||||||||||||||||||||||||||| |||| ||||  | ||||  ||||||||||||| ||||  ||||||||||||    
T  6825508 tgttaggaaacatggcatccatggaaggaaggagataaatctaacaaa-ctctttgtattgatagaaatggaatattacaaa 6825588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 30689633 - 30689672
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  30689633 ttgttaggaaacatggcatccatgaaaggaatgagagaaa 30689672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 8655827 - 8655865
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  8655827 tgttaggaaacatggcatccatagaaggaaggagagaaa 8655865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 782 - 698
Alignment:
Q  140 gttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    ||||||||||||||||||| | ||||||||||||||||   |  |||| |||||||||||||||||| ||||||||| |||||||    
T  782 gttaggaaacatggcatccgtcgaaggaatgagagaaaagtagtaaagctctttgtattgatggaaattgaatattaaaaatgag 698  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 43233964 - 43233925
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43233964 ttgttaggaaacatggcatccatggaaggaatgagagaaa 43233925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 41949332 - 41949370
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaa 176  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41949332 ttgttaggaaacatggcatccatggaaggaatgagagaa 41949370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 21254286 - 21254206
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaa 220  Q
    |||||||||||||||||||||||||||||| ||||||||   | ||||  ||||| |||||||| |||| ||||||||||||    
T  21254286 tgttaggaaacatggcatccatggaaggaaggagagaaaagtaacaaa-ctctttctattgatgaaaaaggaatattacaaa 21254206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 41951731 - 41951768
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaa 176  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41951731 tgttaggaaacatggcatccatggaaggaatgagagaa 41951768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 21256771 - 21256720
Alignment:
Q  125 tcttttttcattgttgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||    
T  21256771 tcttttttcaatgt-gttaggaaacatggcatccatggaaggaaggagagaaa 21256720  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 26873161 - 26873199
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  26873161 tgttaggaaacatggcatccatggaaggaaggagagaaa 26873199  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 2427369 - 2427331
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2427369 tgttaggaaacatggcatccatggaaggaatgagagaaa 2427331  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 25189229 - 25189165
Alignment:
Q  147 aacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaa 211  Q
    |||||||||||| ||||||||||||||||||   |  ||||||  ||||||||||||||| ||||    
T  25189229 aacatggcatccgtggaaggaatgagagaaaagtagtaaagtttattgtattgatggaaattgaa 25189165  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 31269463 - 31269543
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaa 220  Q
    |||||||||||||||||||||||||||||| ||||||||   |  |||  ||||| |||||||||||| |||||||||||||    
T  31269463 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaa-ctctttctattgatggaaattgaatattacaaa 31269543  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 24038401 - 24038363
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  24038401 tgttagaaaacatggcatccatggaaggaatgagagaaa 24038363  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 24039596 - 24039558
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  24039596 tgttagaaaacatggcatccatggaaggaatgagagaaa 24039558  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 600485 - 600597
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatag--atcaaagttctttgtattgatggaaaatgaatatta---caaatgagaaagttagt 233  Q
    |||||||||||||| |||||||| |||||| |||||||| ||  || |||||  |||  ||||||||||| |||||||||   ||| ||| |||||||||    
T  600485 tgttaggaaacatgacatccatgaaaggaaagagagaaa-agttatgaaagtatttt--attgatggaaa-tgaatattattacaattgacaaagttagt 600580  T
Q  234 tacaatgtgacacctta 250  Q
    |||||||||||||||||    
T  600581 tacaatgtgacacctta 600597  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 31180355 - 31180317
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  31180355 tgttaggaagcatggcatccatggaaggaaggagagaaa 31180317  T

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Target: scaffold0959 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 407 - 447
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaaat 178  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  407 ttgttaggaaacaaggcatccatggaaggaatgagagaaat 447  T

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Target: scaffold0023 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 111543 - 111583
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaaat 178  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  111543 ttgttaggaaacatggcatccatggaaggaaggagagaaat 111583  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 5690897 - 5690859
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaa 176  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  5690897 ttgttatgaaacatggcatccatggaaggaatgagagaa 5690859  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 3567484 - 3567572
Alignment:
Q  135 ttgttgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    |||||| ||| ||||||| ||||| ||||||||| || ||||||  | |||| | ||||||||||||| |||  ||||||||||||||||    
T  3567484 ttgttggtagaaaacatgacatccgtggaaggaaggaaagaaatctaacaaact-ctttgtattgatgaaaatggaatattacaaatgag 3567572  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 168
Target Start/End: Complemental strand, 12464844 - 12464815
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaa 168  Q
    ||||||||||||||||||||||||||||||    
T  12464844 tgttaggaaacatggcatccatggaaggaa 12464815  T

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Target: scaffold0862 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 360 - 322
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  360 tgttaggaaacatggcatccatgaaaggaaggagagaaa 322  T

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Target: scaffold0525 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 2028 - 2066
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  2028 tgttgggaaacatggcatccatggaaggaaggagagaaa 2066  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Complemental strand, 58582 - 58544
Alignment:
Q  212 tattacaaatgagaaagttagttacaatgtgacacctta 250  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  58582 tattacaaaagagaaagttagttacaatgtggcacctta 58544  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 144661 - 144741
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaa 220  Q
    ||||||||||||||||||| |||||||||| |||| ||||  | ||||  ||||| ||||||| ||||  ||||||||||||    
T  144661 tgttaggaaacatggcatctatggaaggaaggagataaatctaacaaa-ctctttatattgatagaaatggaatattacaaa 144741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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