View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21157_low_19 (Length: 240)
Name: NF21157_low_19
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21157_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5426482 - 5426704
Alignment:
| Q |
1 |
ttgattaagttaaaaattgaaactttataattnnnnnnnccaacaattgatgaaaacctaattatgaaattggataggccatgatttgattaggttaaag |
100 |
Q |
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| T |
5426482 |
ttgattaagttaaaaattgaaactttataattaaaaaaaccaacaattgatgaaaacctaattatgaaatcggataggccatgatttgattaggtcaaag |
5426581 |
T |
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| Q |
101 |
atcgaaactttaccgtgtttaagcatcttgagaagagcgagggaggagatgtagacttgttcggatgaatctagggttggggaatctggtggtggatgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5426582 |
atcgaaactttaccgtgtttaagcatcttgagaagagcgagggaggagatgtagacttgttcggatgaatctagggttggggaatctggtggtggatgac |
5426681 |
T |
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| Q |
201 |
ctagggctccacctgcacctgcg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
5426682 |
ctagggctccacctgcacctgcg |
5426704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 6086018 - 6086136
Alignment:
| Q |
104 |
gaaactttaccgtgtttaagcatcttgagaagagcgagggaggagatgtagacttgttcggatgaatctagggttggggaatctggtggtggatgacct- |
202 |
Q |
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|||| |||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| || |||||||||||||| |||||||| ||||||||||||||| |
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| T |
6086018 |
gaaattttaccgtgtttgagcattttgagaagagcaagggaagagatgtaaacttgctcagatgaatctagggtcggggaatccggtggtggatgacctc |
6086117 |
T |
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| Q |
203 |
--agggctccacctgcacc |
219 |
Q |
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|| |||||||||||||| |
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| T |
6086118 |
cgagtgctccacctgcacc |
6086136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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