View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21157_low_2 (Length: 475)
Name: NF21157_low_2
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21157_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 17 - 466
Target Start/End: Original strand, 9404564 - 9405013
Alignment:
| Q |
17 |
agattttggttactcattttccctcaaattaacctacatttagtgaagagcttggcggtagctgcacaaaatgatcccctcccctatccagcttttaagg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9404564 |
agattttggttactcattttccctcaaattaacctacatttagtgaagagcttggcggtagctgcacaaaatgatcccctcccctatccagcttttaagg |
9404663 |
T |
|
| Q |
117 |
gagaagatttttgtattaagattacgcaacaaaacttggagaagggattaacaaattgtcaaagaaaacttcatggcaatgttagttctaaataagggga |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9404664 |
gagaagatttttgtattaagattacccaacaagacttggagaagggattaacaaattgtcaaagaaaacttcatggcaatgttggttctaaataagggga |
9404763 |
T |
|
| Q |
217 |
agaatccttatacaacaaaagaaatatcatttaagttgtctggtatgaaaaatatccaatcattagaagatgatctccttaggacatcgttttcttgaat |
316 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9404764 |
agaatccttatacaacaaaataaatatcatttaagttgtctggtatgaaaaatatccaatcattagaagatgatctccttaggacatcgttttcttgaat |
9404863 |
T |
|
| Q |
317 |
tcactttcgccttagttgaagacatacgctgtgtttggctgatgtacattaacaatataaagtcaggagttctcagttttgttagtggacaaaagatttc |
416 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9404864 |
tcacttttgccttagttgaagacatacgctgtgtttggctgatgtacattaacaatataaagtcaggagttctcagttttgttagtggacaaaagatttc |
9404963 |
T |
|
| Q |
417 |
aacactcactcataccgtgaaacccatgaccatgttggaataagaataat |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9404964 |
aacactcactcataccgtgaaacccatgaccatgttggaataagaataat |
9405013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University