View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21157_low_22 (Length: 227)

Name: NF21157_low_22
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21157_low_22
NF21157_low_22
[»] chr2 (10 HSPs)
chr2 (1-216)||(5426011-5426226)
chr2 (80-144)||(680512-680576)
chr2 (94-148)||(3611231-3611285)
chr2 (83-147)||(42621375-42621439)
chr2 (101-144)||(12464491-12464534)
chr2 (101-147)||(1893299-1893345)
chr2 (102-147)||(5759594-5759639)
chr2 (139-172)||(14209236-14209269)
chr2 (101-150)||(33319830-33319879)
chr2 (101-177)||(32098348-32098424)
[»] chr8 (3 HSPs)
chr8 (80-172)||(20672731-20672823)
chr8 (100-177)||(39392699-39392777)
chr8 (108-160)||(30947490-30947542)
[»] chr7 (7 HSPs)
chr7 (100-150)||(9038115-9038165)
chr7 (100-169)||(7244664-7244733)
chr7 (101-148)||(9050640-9050687)
chr7 (99-146)||(47130801-47130848)
chr7 (100-143)||(47303415-47303458)
chr7 (101-147)||(514773-514819)
chr7 (101-146)||(2825249-2825294)
[»] chr5 (8 HSPs)
chr5 (80-146)||(7674655-7674721)
chr5 (100-137)||(1465037-1465074)
chr5 (100-147)||(4014441-4014488)
chr5 (100-147)||(12425577-12425624)
chr5 (104-150)||(7319029-7319075)
chr5 (94-177)||(29116961-29117046)
chr5 (100-172)||(12242727-12242799)
chr5 (102-162)||(36774726-36774786)
[»] chr3 (5 HSPs)
chr3 (101-177)||(44284098-44284174)
chr3 (104-150)||(2719471-2719517)
chr3 (100-146)||(21367674-21367720)
chr3 (100-137)||(24085355-24085392)
chr3 (78-147)||(52619009-52619078)
[»] scaffold0020 (1 HSPs)
scaffold0020 (79-146)||(159969-160036)
[»] chr6 (7 HSPs)
chr6 (84-171)||(2205591-2205678)
chr6 (100-145)||(835266-835311)
chr6 (139-171)||(323916-323948)
chr6 (132-172)||(4322834-4322874)
chr6 (80-152)||(4324450-4324522)
chr6 (82-150)||(8364975-8365043)
chr6 (94-146)||(26694885-26694937)
[»] chr1 (6 HSPs)
chr1 (103-150)||(489193-489240)
chr1 (101-147)||(7137016-7137062)
chr1 (78-128)||(10799487-10799537)
chr1 (125-177)||(26293170-26293222)
chr1 (82-146)||(37842354-37842418)
chr1 (101-149)||(41195211-41195259)
[»] chr4 (2 HSPs)
chr4 (101-146)||(9841073-9841116)
chr4 (101-147)||(16199999-16200045)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 5426226 - 5426011
Alignment:
Q  1 tttgtttttcagaatttcattacgtgttctttgttttttgcttagatttgtgaatgtagggttggtatagtgaacttatttatgacatgtttgtaaacag 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5426226 tttgtttttcagaattttattacgtgttctttgttttttgcttagacttgtgaatgtagggttggtatagtgaacttatttatgacatgttcgtaaacag 5426127  T
Q  101 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattttaacttttgttaaagaagacctcctccgtcctatcttaac 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5426126 ttttcagcttattttcacaagtcctccagaatagcttgtgaaaacagtttgaatttattttaacttttgttaaagaagacctcctctgtcctatcttaac 5426027  T
Q  201 tgagccttttgttcat 216  Q
    ||| ||||||||||||    
T  5426026 tgatccttttgttcat 5426011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 680576 - 680512
Alignment:
Q  80 ttatgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaa 144  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| || || |||||||| ||||||    
T  680576 ttatgacatgtttataaactgttttcagcttattttcacaagttcttcaagatagcttatgaaaa 680512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 3611285 - 3611231
Alignment:
Q  94 taaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagt 148  Q
    ||||| ||||| |||||||||||| |||| ||||| |||||||||||||||||||    
T  3611285 taaactgtttttagcttattttcataagttctccaagatagcttgtgaaaacagt 3611231  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 42621375 - 42621439
Alignment:
Q  83 tgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 147  Q
    |||||||| |||||   ||||||||||||||||||||||| |||||| ||| ||| |||||||||    
T  42621375 tgacatgtctgtaagttgttttcagcttattttcacaagttctccagaataacttatgaaaacag 42621439  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 12464491 - 12464534
Alignment:
Q  101 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaa 144  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||    
T  12464491 ttttcagcttattttcacaagttctccaagatagcttatgaaaa 12464534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 1893299 - 1893345
Alignment:
Q  101 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 147  Q
    |||||||||||||||||||||| ||||| ||||||||  ||||||||    
T  1893299 ttttcagcttattttcacaagttctccaagatagcttccgaaaacag 1893345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 5759594 - 5759639
Alignment:
Q  102 tttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 147  Q
    |||||||||||||||||||  ||||||| ||||||| |||||||||    
T  5759594 tttcagcttattttcacaaaccctccagaatagcttatgaaaacag 5759639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 14209269 - 14209236
Alignment:
Q  139 tgaaaacagtttgaatttattttaacttttgtta 172  Q
    |||||||||||||||||||||||| |||||||||    
T  14209269 tgaaaacagtttgaatttattttatcttttgtta 14209236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 33319830 - 33319879
Alignment:
Q  101 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagttt 150  Q
    ||||||||||||||||| |||| ||||| ||||| || ||||||||||||    
T  33319830 ttttcagcttattttcataagttctccaagatagtttatgaaaacagttt 33319879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 32098348 - 32098424
Alignment:
Q  101 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattttaacttttgttaaagaa 177  Q
    |||||||||||||| |  |||| |||||  ||| ||| |||||||| ||||| ||||||||| ||||||||| ||||    
T  32098348 ttttcagcttatttccgtaagttctccataataacttatgaaaacactttgactttattttatcttttgttatagaa 32098424  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 20672823 - 20672731
Alignment:
Q  80 ttatgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattttaacttttgtta 172  Q
    ||||||||||||  ||| | |||||||||||||||||| |||  |||||||||||||| | |||||||||||| ||||||||| |||||||||    
T  20672823 ttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaacagtttgactttattttatcttttgtta 20672731  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 39392699 - 39392777
Alignment:
Q  100 gttttcagcttattttcacaagtcctccaggatagcttgtgaaa-acagtttgaatttattttaacttttgttaaagaa 177  Q
    |||||||||||||||||| |||    ||| |||||| ||||||| ||||||||| ||||||||| ||||||||| ||||    
T  39392699 gttttcagcttattttcataagcttgccaagatagcctgtgaaacacagtttgactttattttatcttttgttatagaa 39392777  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 30947490 - 30947542
Alignment:
Q  108 cttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattt 160  Q
    |||||||||| || || ||||||||||||| ||||||| |||||| |||||||    
T  30947490 cttattttcataattcatccaggatagcttatgaaaacggtttgattttattt 30947542  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 9038165 - 9038115
Alignment:
Q  100 gttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagttt 150  Q
    ||||||||||||||||||||||| ||||| ||||| || ||||||||||||    
T  9038165 gttttcagcttattttcacaagttctccatgatagtttatgaaaacagttt 9038115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 7244733 - 7244664
Alignment:
Q  100 gttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattttaacttttg 169  Q
    |||||||||||||||||| |||  |||||  ||||||| |||||||||||||| ||| ||||| ||||||    
T  7244733 gttttcagcttattttcataagctctccaatatagcttatgaaaacagtttgactttcttttatcttttg 7244664  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 9050687 - 9050640
Alignment:
Q  101 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagt 148  Q
    |||||||||||||||||||||| ||||| ||||| || ||||||||||    
T  9050687 ttttcagcttattttcacaagttctccaagatagtttatgaaaacagt 9050640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 47130801 - 47130848
Alignment:
Q  99 agttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 146  Q
    |||||||| ||||||||||||||| ||||| |||||||| ||||||||    
T  47130801 agttttcaacttattttcacaagttctccaagatagcttatgaaaaca 47130848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 47303458 - 47303415
Alignment:
Q  100 gttttcagcttattttcacaagtcctccaggatagcttgtgaaa 143  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||    
T  47303458 gttttcaacttattttcacaagttctccaggattgcttgtgaaa 47303415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 514819 - 514773
Alignment:
Q  101 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 147  Q
    ||||||||||||||| |||||  |||||||||||||| |||||||||    
T  514819 ttttcagcttattttgacaagctctccaggatagcttatgaaaacag 514773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 2825249 - 2825294
Alignment:
Q  101 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 146  Q
    |||||||||||||| || |||| ||| |||||||||||||||||||    
T  2825249 ttttcagcttatttccataagttctctaggatagcttgtgaaaaca 2825294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 7674721 - 7674655
Alignment:
Q  80 ttatgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 146  Q
    ||||||||||||| |||   ||||||||||||||||||||| | ||||| |||||||| ||||||||    
T  7674721 ttatgacatgtttataaggtgttttcagcttattttcacaaattctccaagatagcttatgaaaaca 7674655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 1465037 - 1465074
Alignment:
Q  100 gttttcagcttattttcacaagtcctccaggatagctt 137  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  1465037 gttttcagcttattttcacaagtcctccaagatagctt 1465074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 4014441 - 4014488
Alignment:
Q  100 gttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 147  Q
    |||||||||||||||||| |||| ||||| |||||||| |||||||||    
T  4014441 gttttcagcttattttcataagttctccaagatagcttatgaaaacag 4014488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 12425624 - 12425577
Alignment:
Q  100 gttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 147  Q
    ||||||| |||||||||| |||| ||||| ||||||||||||||||||    
T  12425624 gttttcaacttattttcataagttctccaagatagcttgtgaaaacag 12425577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 7319029 - 7319075
Alignment:
Q  104 tcagcttattttcacaagtcctccaggatagcttgtgaaaacagttt 150  Q
    |||||||||||||| |||| ||||| |||||||| ||||||||||||    
T  7319029 tcagcttattttcataagttctccaagatagcttatgaaaacagttt 7319075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 29116961 - 29117046
Alignment:
Q  94 taaacagttttcagcttattttcacaagtcctccaggatagcttgt--gaaaacagtttgaatttattttaacttttgttaaagaa 177  Q
    ||||| ||||||||||||||| || |||   | ||||||||||| |  ||||||||||||| ||||||||| ||||||||| ||||    
T  29116961 taaactgttttcagcttatttgcataagcttttcaggatagcttatacgaaaacagtttgactttattttatcttttgttatagaa 29117046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 12242727 - 12242799
Alignment:
Q  100 gttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattttaacttttgtta 172  Q
    |||||||||||| || || |||  ||||| |||||||| |||||||| ||||| | ||||||| |||||||||    
T  12242727 gttttcagcttacttccataagctctccaagatagcttatgaaaacaatttgactctattttatcttttgtta 12242799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 36774726 - 36774786
Alignment:
Q  102 tttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttatttta 162  Q
    ||||||||||||| || |||  |||||||||||||| | |||||||||||| ||| |||||    
T  36774726 tttcagcttatttccataagctctccaggatagcttataaaaacagtttgactttgtttta 36774786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 44284098 - 44284174
Alignment:
Q  101 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattttaacttttgttaaagaa 177  Q
    ||||||||||||||  | |||  |||||||||||||| |||||||||||||| ||| |||||  |||||||| ||||    
T  44284098 ttttcagcttatttctataagctctccaggatagcttatgaaaacagtttgactttgttttattttttgttatagaa 44284174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 2719517 - 2719471
Alignment:
Q  104 tcagcttattttcacaagtcctccaggatagcttgtgaaaacagttt 150  Q
    |||||||||||||| |||| ||||| |||||||| ||||||||||||    
T  2719517 tcagcttattttcataagttctccaagatagcttatgaaaacagttt 2719471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 21367720 - 21367674
Alignment:
Q  100 gttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 146  Q
    |||||||||||||||||| |||| ||||| |||||||| ||||||||    
T  21367720 gttttcagcttattttcataagttctccaagatagcttatgaaaaca 21367674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 24085355 - 24085392
Alignment:
Q  100 gttttcagcttattttcacaagtcctccaggatagctt 137  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  24085355 gttttcagcttattttcacaagttctccaagatagctt 24085392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 52619078 - 52619009
Alignment:
Q  78 atttatgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 147  Q
    ||||||||||||||  ||| |  |||||| ||||||||||||||  || || ||||||||||||||||||    
T  52619078 atttatgacatgttcataagctattttcaccttattttcacaagctcttcaagatagcttgtgaaaacag 52619009  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 159969 - 160036
Alignment:
Q  79 tttatgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 146  Q
    |||||||||||| | ||| ||||||||||||||||| ||||||  ||  |||||||||| ||||||||    
T  159969 tttatgacatgtctataagcagttttcagcttatttccacaagctctttaggatagcttatgaaaaca 160036  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 2205591 - 2205678
Alignment:
Q  84 gacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattttaacttttgtt 171  Q
    ||||||||| |||||  | |||||||||||| || |||  ||||| |||||||| |||||||| ||||| ||| ||||| ||||||||    
T  2205591 gacatgtttataaactatattcagcttatttccataagctctccaagatagcttatgaaaacaatttgactttgttttatcttttgtt 2205678  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 835266 - 835311
Alignment:
Q  100 gttttcagcttattttcacaagtcctccaggatagcttgtgaaaac 145  Q
    |||||||||||||||||| |||| ||||| |||||||| |||||||    
T  835266 gttttcagcttattttcataagttctccaagatagcttatgaaaac 835311  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 323948 - 323916
Alignment:
Q  139 tgaaaacagtttgaatttattttaacttttgtt 171  Q
    |||||||||||||||||| ||||||||||||||    
T  323948 tgaaaacagtttgaatttgttttaacttttgtt 323916  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 4322834 - 4322874
Alignment:
Q  132 tagcttgtgaaaacagtttgaatttattttaacttttgtta 172  Q
    |||||| |||||| ||| |||||||||||||||||||||||    
T  4322834 tagcttatgaaaatagtatgaatttattttaacttttgtta 4322874  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 4324450 - 4324522
Alignment:
Q  80 ttatgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttga 152  Q
    |||||||||||   ||||| | ||| ||||||||| || ||||  ||||||||||||| ||||||||||||||    
T  4324450 ttatgacatgtccctaaactgcttttagcttatttgcataagttttccaggatagcttatgaaaacagtttga 4324522  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 8364975 - 8365043
Alignment:
Q  82 atgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagttt 150  Q
    |||||||||||  || | ||||||||||||||||||  ||| | ||| |||||||| ||||||||||||    
T  8364975 atgacatgtttacaagctgttttcagcttattttcatcagttcaccatgatagcttatgaaaacagttt 8365043  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 26694937 - 26694885
Alignment:
Q  94 taaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 146  Q
    |||||||||||||||||||||||| |||| || || ||||| || ||||||||    
T  26694937 taaacagttttcagcttattttcataagttcttcaagatagtttatgaaaaca 26694885  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 489240 - 489193
Alignment:
Q  103 ttcagcttattttcacaagtcctccaggatagcttgtgaaaacagttt 150  Q
    |||||||||||||||||||| || ||  ||||||||||||||||||||    
T  489240 ttcagcttattttcacaagttctgcacaatagcttgtgaaaacagttt 489193  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 7137016 - 7137062
Alignment:
Q  101 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 147  Q
    ||||||||||||||||| |||| ||||| |||||||| |||||||||    
T  7137016 ttttcagcttattttcataagttctccaagatagcttatgaaaacag 7137062  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 10799537 - 10799487
Alignment:
Q  78 atttatgacatgtttgtaaacagttttcagcttattttcacaagtcctcca 128  Q
    ||||||||||||||| ||| | |||||||||||||||||| |||| |||||    
T  10799537 atttatgacatgtttataatctgttttcagcttattttcataagttctcca 10799487  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 26293170 - 26293222
Alignment:
Q  125 tccaggatagcttgtgaaaacagtttgaatttattttaacttttgttaaagaa 177  Q
    ||||||||||||| |||||||| ||||| |||||||||  |||||||| ||||    
T  26293170 tccaggatagcttatgaaaacaatttgactttattttactttttgttatagaa 26293222  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 37842354 - 37842418
Alignment:
Q  82 atgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 146  Q
    ||||||||||  ||| |||||||||||||||||| | |||| || || |||||||| ||||||||    
T  37842354 atgacatgttcataagcagttttcagcttatttttataagttcttcaagatagcttatgaaaaca 37842418  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 41195211 - 41195259
Alignment:
Q  101 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtt 149  Q
    ||||||||||||||||| |||| ||||| ||||| || |||||||||||    
T  41195211 ttttcagcttattttcataagttctccaagatagtttatgaaaacagtt 41195259  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 9841116 - 9841073
Alignment:
Q  101 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 146  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||||    
T  9841116 ttttcagcttattttcacaagt--tccaggatagcttatgaaaaca 9841073  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 16199999 - 16200045
Alignment:
Q  101 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 147  Q
    |||| |||||||||||| |||||||||| |||||||| |||||||||    
T  16199999 tttttagcttattttcataagtcctccaagatagcttatgaaaacag 16200045  T

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