View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21157_low_3 (Length: 472)
Name: NF21157_low_3
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21157_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 11107929 - 11108258
Alignment:
| Q |
18 |
ttgtgcatggaattttgcacgaaaa-aatccaagattgaaaacgcaagcggctatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcac |
116 |
Q |
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| T |
11107929 |
ttgtgcatcgaattttgcacgaaaaaaatccaagattgaaaacgcaagcggttatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcac |
11108028 |
T |
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| Q |
117 |
atcggaagatttgcacccggtgttacaagttatcgatttgaagcttgttcagtcgcagcagaatagtagtactgagagattccgagtcgttctctccgat |
216 |
Q |
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| T |
11108029 |
atcggaagaattgcacccggtgttacaattcatcgatttgaagcctgttcagtcgcagcagaatagtgctatcgagatataccaactctttctctccgat |
11108128 |
T |
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| Q |
217 |
ggtttacattatgaacaaggaatgcttgctacacagaagaatgagttggttcataatggaaggttgcagaaaggctccattgttaagcttactcagttca |
316 |
Q |
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| T |
11108129 |
ggtttgcattatgaacatggaatgcttgctaaacagaagaatgagttggttcataatggaaggttgcagaaaggttccattgttaagcttactcagttca |
11108228 |
T |
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| Q |
317 |
cctgtaaccatgttcagactcgcaagtaag |
346 |
Q |
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| T |
11108229 |
tctataaacatgttcggactcgcaagtaag |
11108258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 69 - 346
Target Start/End: Original strand, 11116179 - 11116456
Alignment:
| Q |
69 |
tatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcacatcggaagatttgcacccggtgttacaagttatcgatttgaagcttgttcag |
168 |
Q |
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| T |
11116179 |
tatggccgtgaatctaactcagggtgcgatagtaacgatgtgtttcacatcggaagatttgcacccggtgttacaagttatcgatttgaagcttgttcag |
11116278 |
T |
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| Q |
169 |
tcgcagcagaatagtagtactgagagattccgagtcgttctctccgatggtttacattatgaacaaggaatgcttgctacacagaagaatgagttggttc |
268 |
Q |
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| T |
11116279 |
tcgcagcagaatagtggtactgagagataccgagtcgttctctccgatggtttgcattatcaacaaggaatgctcgctacacagaagaatgagttggttc |
11116378 |
T |
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| Q |
269 |
ataatggaaggttgcagaaaggctccattgttaagcttactcagttcacctgtaaccatgttcagactcgcaagtaag |
346 |
Q |
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| T |
11116379 |
attctggaaggttgcagaaaggttccattgttaagctttctcagttcatctgtaacgttgttcagaatcgcaagtaag |
11116456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 62 - 330
Target Start/End: Original strand, 11108966 - 11109234
Alignment:
| Q |
62 |
aagcggctatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcacatcggaagatttgcacccggtgttacaagttatcgatttgaagct |
161 |
Q |
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| T |
11108966 |
aagcggttatggctgtgaatctgacacaaggtgcgataatgaagatgtgtttcacatcggaggaaatccaaccggttttacaagttatcgatttgaagct |
11109065 |
T |
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| Q |
162 |
tgttcagtcgcagcagaatagtagtactgagagattccgagtcgttctctccgatggtttacattatgaacaaggaatgcttgctacacagaagaatgag |
261 |
Q |
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| | ||||||||||| ||||| | |||| | | | || | |||||||||||||||||| ||||||| ||||||||| || || ||||| ||| || |
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| T |
11109066 |
tttgcagtcgcagcaaaatagcactactaaaatgtaccaactcgttctctccgatggttcacattataaacaaggaacactctctgttcagaaaaataag |
11109165 |
T |
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| Q |
262 |
ttggttcataatggaaggttgcagaaaggctccattgttaagcttactcagttcacctgtaaccatgtt |
330 |
Q |
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| T |
11109166 |
ttgattcattctggaaggttgcagaaaggttccattgttaagctcaatgagatcatctgtaacgatgtt |
11109234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 69 - 305
Target Start/End: Original strand, 11111701 - 11111937
Alignment:
| Q |
69 |
tatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcacatcggaagatttgcacccggtgttacaagttatcgatttgaagcttgttcag |
168 |
Q |
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| T |
11111701 |
tatggctgtgaatctgacccaaggtgcgataataacaatgtgtttcacatcggaagtatgggaaccggtgttacaagttttcgatatgaagcttgttcag |
11111800 |
T |
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| Q |
169 |
tcgcagcagaatagtagtactgagagattccgagtcgttctctccgatggtttacattatgaacaaggaatgcttgctacacagaagaatgagttggttc |
268 |
Q |
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| T |
11111801 |
tcgcagcagaataacactactgagccgtaccgactagttctctccgatggtttgtattatcaacaaggaatgctcgttgtgcagaagaaccatttggttc |
11111900 |
T |
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| Q |
269 |
ataatggaaggttgcagaaaggctccattgttaagct |
305 |
Q |
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| T |
11111901 |
attctggaaggttgcagaaaggttccattgttaagct |
11111937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 11108314 - 11108367
Alignment:
| Q |
402 |
acattaattgaaaatggtatctgaaactagatgttattaggttaaccatgtgta |
455 |
Q |
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| T |
11108314 |
acattaattgaaaatggtatctgaaactagatgttattaggttaaccatgtgta |
11108367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 11112054 - 11112098
Alignment:
| Q |
402 |
acattaattgaaaatggtatctgaaactagatgttattaggttaa |
446 |
Q |
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| T |
11112054 |
acattaatagaaaatggtatctgaaattagatttttttaggttaa |
11112098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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