View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21157_low_5 (Length: 433)

Name: NF21157_low_5
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21157_low_5
NF21157_low_5
[»] chr5 (6 HSPs)
chr5 (1-412)||(26207969-26208369)
chr5 (323-368)||(11071074-11071119)
chr5 (323-372)||(14332152-14332201)
chr5 (313-372)||(13049972-13050031)
chr5 (303-358)||(18542217-18542272)
chr5 (338-369)||(19625927-19625958)
[»] chr3 (14 HSPs)
chr3 (41-194)||(33530360-33530513)
chr3 (303-387)||(35990503-35990586)
chr3 (313-380)||(47542543-47542609)
chr3 (305-363)||(17105262-17105320)
chr3 (313-376)||(343185-343248)
chr3 (337-380)||(47542785-47542828)
chr3 (337-380)||(47543004-47543047)
chr3 (337-380)||(47556232-47556275)
chr3 (337-380)||(47556451-47556494)
chr3 (313-363)||(2401474-2401524)
chr3 (313-363)||(33331945-33331995)
chr3 (305-363)||(35335601-35335659)
chr3 (316-353)||(35060572-35060609)
chr3 (313-357)||(36895369-36895413)
[»] chr6 (6 HSPs)
chr6 (305-360)||(8013842-8013897)
chr6 (313-359)||(34443049-34443095)
chr6 (305-369)||(29236258-29236322)
chr6 (305-355)||(26493523-26493573)
chr6 (313-358)||(8805967-8806012)
chr6 (323-363)||(3963769-3963809)
[»] chr4 (8 HSPs)
chr4 (313-383)||(22402391-22402461)
chr4 (313-371)||(40583970-40584028)
chr4 (313-363)||(7367561-7367611)
chr4 (314-366)||(49477714-49477766)
chr4 (303-358)||(43061679-43061734)
chr4 (331-368)||(52738955-52738992)
chr4 (313-357)||(1678682-1678726)
chr4 (338-374)||(15172714-15172750)
[»] scaffold0205 (1 HSPs)
scaffold0205 (313-397)||(21424-21507)
[»] chr8 (6 HSPs)
chr8 (313-355)||(3943758-3943800)
chr8 (305-361)||(16330981-16331037)
chr8 (313-358)||(10440381-10440426)
chr8 (313-366)||(29942906-29942959)
chr8 (313-365)||(5071685-5071737)
chr8 (313-353)||(11556955-11556995)
[»] chr1 (5 HSPs)
chr1 (303-371)||(13342060-13342127)
chr1 (313-393)||(43609790-43609869)
chr1 (313-356)||(10042299-10042342)
chr1 (316-369)||(13907170-13907223)
chr1 (317-361)||(303693-303737)
[»] chr7 (3 HSPs)
chr7 (313-355)||(6632428-6632470)
chr7 (314-355)||(17937667-17937708)
chr7 (313-369)||(3262871-3262926)


Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 26208369 - 26207969
Alignment:
Q  1 gcagtgttaaggagagccaaagcagtaacatcatctagaatgagtggaaacttactcttcaaggcatcaaaattcatggaagcatgtgcagtatacaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26208369 gcagtgttaaggagagccaaagcagtaacatcatctagaatgagtggaaacttactcttcaaggcatcaaaattcatggaagcatgtgcagtatacaatg 26208270  T
Q  101 aaggactagatcatgatccacacaactcagttctgttatgcaacagagcagcgtgtcgttctaagctagggcagtatgaaaaagcaattgaagattgtga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26208269 aaggactagatcatgatccacacaactcagttctgttatgcaacagagcagcgtgtcgttctaagctagggcagtatgaaaaagcaattgaagattgtga 26208170  T
Q  201 tgctgcacttatgcttaatccatgttatagcaaagcaagattaaggagggcctattgtaatgccaaggtactttaaatgttagatttataataacatgtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26208169 tgctgcacttatgcttaatccatgttatagcaaagcaagattaaggagggcctattgtaatgccaaggtactttaaatgttagatttataataacatgtg 26208070  T
Q  301 actcgacactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgtgtcagtgtttgacactgacacatgttgaacatta 400  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |           ||||||||||||||||||||||||    
T  26208069 actcgatactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgtcg-----------gacactgacacatgttgaacatta 26207981  T
Q  401 acacgtgtcaga 412  Q
    ||||||||||||    
T  26207980 acacgtgtcaga 26207969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 11071074 - 11071119
Alignment:
Q  323 agaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgtgt 368  Q
    |||||||||||||| | |||||||||||||||||||| ||||||||    
T  11071074 agaaaataaaagtgatcgaatgtaaccacatgtgtcaatgttgtgt 11071119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 14332201 - 14332152
Alignment:
Q  323 agaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgtgtcagt 372  Q
    |||||||||||||| |||||||||||||||||||| ||| |||| |||||    
T  14332201 agaaaataaaagtgattgaatgtaaccacatgtgtgagtattgtctcagt 14332152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 13050031 - 13049972
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgtgtcagt 372  Q
    ||||||||| |||||||||||||   ||||||||| |||||||||| | |||||||||||    
T  13050031 taataatttaagaaaataaaagtcaatgaatgtaatcacatgtgtcggcgttgtgtcagt 13049972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 18542272 - 18542217
Alignment:
Q  303 tcgacactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtc 358  Q
    ||||||| | |||||||||||||||||| ||||  |||||||||| ||||||||||    
T  18542272 tcgacaccagtaataatttgagaaaatacaagtaattgaatgtaatcacatgtgtc 18542217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 369
Target Start/End: Complemental strand, 19625958 - 19625927
Alignment:
Q  338 ttgaatgtaaccacatgtgtcagtgttgtgtc 369  Q
    ||||||||||||||||||||||||||||||||    
T  19625958 ttgaatgtaaccacatgtgtcagtgttgtgtc 19625927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 41 - 194
Target Start/End: Complemental strand, 33530513 - 33530360
Alignment:
Q  41 tgagtggaaacttactcttcaaggcatcaaaattcatggaagcatgtgcagtatacaatgaaggactagatcatgatccacacaactcagttctgttatg 140  Q
    ||||||| ||||| ||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||  ||||||||  ||||||||||||||||||    
T  33530513 tgagtggtaacttgctcttcaaggcatcaaagttcacggaagcatgtgcggtatacaatgaaggactagagtatgatccattcaactcagttctgttatg 33530414  T
Q  141 caacagagcagcgtgtcgttctaagctagggcagtatgaaaaagcaattgaaga 194  Q
     ||||||||||| |||||||||||||| || || | ||| ||||||||||||||    
T  33530413 taacagagcagcttgtcgttctaagctcggccaatttgagaaagcaattgaaga 33530360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 35990586 - 35990503
Alignment:
Q  303 tcgacactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgtgtcagtgtttgacactgacac 387  Q
    ||||||||  ||||||||||||||||||||| |   ||||||||||||||||||||||||| | || |||||| ||||| |||||    
T  35990586 tcgacactgataataatttgagaaaataaaa-taactgaatgtaaccacatgtgtcagtgtcgagtaagtgttggacaccgacac 35990503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 47542543 - 47542609
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgtgtcagtgtttgaca 380  Q
    ||||||||||||||||| ||  | ||||||||||| |||||||||| ||||||||||| |||||||||    
T  47542543 taataatttgagaaaatgaac-tatttgaatgtaatcacatgtgtcggtgttgtgtcattgtttgaca 47542609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 17105262 - 17105320
Alignment:
Q  305 gacactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgt 363  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||| ||| |||| ||||    
T  17105262 gacactaataataatttaagaaaataaaagtgattgaatgtaacctcatttgtcggtgt 17105320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 343248 - 343185
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgtgtcagtgttt 376  Q
    |||||||||||||||||| |||   ||||||||||| |||||||||||| | |||||| |||||    
T  343248 taataatttgagaaaatataagcagttgaatgtaactacatgtgtcagtttcgtgtcattgttt 343185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 47542785 - 47542828
Alignment:
Q  337 tttgaatgtaaccacatgtgtcagtgttgtgtcagtgtttgaca 380  Q
    ||||||||||| |||||||||| ||||||||||| |||||||||    
T  47542785 tttgaatgtaatcacatgtgtcggtgttgtgtcattgtttgaca 47542828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 47543004 - 47543047
Alignment:
Q  337 tttgaatgtaaccacatgtgtcagtgttgtgtcagtgtttgaca 380  Q
    ||||||||||| |||||||||| ||||||||||| |||||||||    
T  47543004 tttgaatgtaatcacatgtgtcggtgttgtgtcattgtttgaca 47543047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 47556232 - 47556275
Alignment:
Q  337 tttgaatgtaaccacatgtgtcagtgttgtgtcagtgtttgaca 380  Q
    ||||||||||| |||||||||| ||||||||||| |||||||||    
T  47556232 tttgaatgtaatcacatgtgtcggtgttgtgtcattgtttgaca 47556275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 47556451 - 47556494
Alignment:
Q  337 tttgaatgtaaccacatgtgtcagtgttgtgtcagtgtttgaca 380  Q
    ||||||||||| |||||||||| ||||||||||| |||||||||    
T  47556451 tttgaatgtaatcacatgtgtcggtgttgtgtcattgtttgaca 47556494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 2401524 - 2401474
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgt 363  Q
    ||||||||||||||||| |||||| || |||||||| ||||||| ||||||    
T  2401524 taataatttgagaaaatcaaagtgattaaatgtaactacatgtgccagtgt 2401474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 33331995 - 33331945
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgt 363  Q
    |||||||||||||||||||||||| || |||||||  ||||||||| ||||    
T  33331995 taataatttgagaaaataaaagtgattaaatgtaattacatgtgtcggtgt 33331945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 35335601 - 35335659
Alignment:
Q  305 gacactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgt 363  Q
    ||||||| ||||||||||||||||| |||||| || |||| |||||| |||| ||||||    
T  35335601 gacactagtaataatttgagaaaatgaaagtgattaaatgcaaccacttgtggcagtgt 35335659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 35060572 - 35060609
Alignment:
Q  316 taatttgagaaaataaaagtgtttgaatgtaaccacat 353  Q
    |||||||||||||||||| || ||||||||||||||||    
T  35060572 taatttgagaaaataaaattgattgaatgtaaccacat 35060609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 36895369 - 36895413
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgt 357  Q
    ||||||||||| |||||| ||||| |||||||||| |||||||||    
T  36895369 taataatttgataaaatataagtgattgaatgtaatcacatgtgt 36895413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 8013897 - 8013842
Alignment:
Q  305 gacactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcag 360  Q
    ||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  8013897 gacactagtaataatttgaaaaaatataagtgattgaatgtaaccacatgtgtcag 8013842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 34443095 - 34443049
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtca 359  Q
    ||||||||||||||| | |||||| ||||||||||||||||||||||    
T  34443095 taataatttgagaaagtgaaagtgattgaatgtaaccacatgtgtca 34443049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 29236258 - 29236322
Alignment:
Q  305 gacactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgtgtc 369  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||  | ||||||  |||||||||    
T  29236258 gacactaataataatttgagaaaatagaagtgattgaatgtaactgcttgtgtcgttgttgtgtc 29236322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 26493573 - 26493523
Alignment:
Q  305 gacactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgt 355  Q
    ||||||| ||| |||||||||||||| ||||| ||||||||||| ||||||    
T  26493573 gacactagtaacaatttgagaaaatagaagtgattgaatgtaactacatgt 26493523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 8806012 - 8805967
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtc 358  Q
    ||||||||||||||| | |||||| ||||||| |||||||||||||    
T  8806012 taataatttgagaaattgaaagtgattgaatgaaaccacatgtgtc 8805967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 3963809 - 3963769
Alignment:
Q  323 agaaaataaaagtgtttgaatgtaaccacatgtgtcagtgt 363  Q
    |||||||||||||| ||||||||||||| | ||||||||||    
T  3963809 agaaaataaaagtgattgaatgtaaccataagtgtcagtgt 3963769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 22402391 - 22402461
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgtgtcagtgtttgacactg 383  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||||| |||| |||| |||||  |||||||    
T  22402391 taataaattgagaaaatagaagtgattgaatgtaaccacatgtgtcggtgtcgtgttagtgtcagacactg 22402461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 371
Target Start/End: Complemental strand, 40584028 - 40583970
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgtgtcag 371  Q
    ||||||||| | |||||||||||| |||||||||| ||||||||||||| |||||||||    
T  40584028 taataattttaaaaaataaaagtgattgaatgtaaacacatgtgtcagtattgtgtcag 40583970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 7367561 - 7367611
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgt 363  Q
    ||||||||||||||||| || ||| ||||| ||||||||||||||||||||    
T  7367561 taataatttgagaaaatgaaggtgattgaacgtaaccacatgtgtcagtgt 7367611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 49477714 - 49477766
Alignment:
Q  314 aataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgt 366  Q
    |||||||||| |||||  ||||| |||||||||| ||||||||||||||||||    
T  49477714 aataatttgataaaatggaagtggttgaatgtaagcacatgtgtcagtgttgt 49477766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 43061734 - 43061679
Alignment:
Q  303 tcgacactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtc 358  Q
    ||||||||| |||||||||||||||||| || |  ||||||||||| |||||||||    
T  43061734 tcgacactagtaataatttgagaaaatataaataattgaatgtaacaacatgtgtc 43061679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 52738992 - 52738955
Alignment:
Q  331 aaagtgtttgaatgtaaccacatgtgtcagtgttgtgt 368  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  52738992 aaagtgattgaatgtaaccacatgtgtcagtgtcgtgt 52738955  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 1678682 - 1678726
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgt 357  Q
    ||||||||||||||||| |||||| || |||||||| ||||||||    
T  1678682 taataatttgagaaaatgaaagtgattaaatgtaactacatgtgt 1678726  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 15172750 - 15172714
Alignment:
Q  338 ttgaatgtaaccacatgtgtcagtgttgtgtcagtgt 374  Q
    |||||||||||||||| |||| |||||||||||||||    
T  15172750 ttgaatgtaaccacatatgtcggtgttgtgtcagtgt 15172714  T

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Target: scaffold0205 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 397
Target Start/End: Original strand, 21424 - 21507
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgtgtcagtgtttgacactgacacatgttgaaca 397  Q
    ||||| ||||||||||||||| |  |||||||||||||||||| |||||||||||||| | ||  |||||||||| ||| |||||    
T  21424 taatagtttgagaaaataaaa-taattgaatgtaaccacatgtatcagtgttgtgtcaatattaaacactgacacgtgtcgaaca 21507  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 3943758 - 3943800
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgt 355  Q
    ||||||||| |||||||||||||| ||||||||||||||||||    
T  3943758 taataatttaagaaaataaaagtgattgaatgtaaccacatgt 3943800  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 16330981 - 16331037
Alignment:
Q  305 gacactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagt 361  Q
    ||||||| ||||||||| ||||||| ||| || || |||||||||||||||||||||    
T  16330981 gacactagtaataatttaagaaaatgaaaatgattaaatgtaaccacatgtgtcagt 16331037  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 10440381 - 10440426
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtc 358  Q
    ||||||||| |||||||||||||| |||||||| || |||||||||    
T  10440381 taataatttaagaaaataaaagtgattgaatgttactacatgtgtc 10440426  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 29942959 - 29942906
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgt 366  Q
    |||||||| |||||||||||||||| | ||||||| || ||||||||| |||||    
T  29942959 taataattggagaaaataaaagtgtataaatgtaatcaaatgtgtcagcgttgt 29942906  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 5071685 - 5071737
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttg 365  Q
    |||||| || |||||||| ||||| |||||||||| || ||||||||||||||    
T  5071685 taataacttaagaaaatacaagtgattgaatgtaatcatatgtgtcagtgttg 5071737  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 11556995 - 11556955
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacat 353  Q
    |||||||||||||||||  ||||| ||||||||||||||||    
T  11556995 taataatttgagaaaatttaagtgattgaatgtaaccacat 11556955  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 13342060 - 13342127
Alignment:
Q  303 tcgacactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgtgtcag 371  Q
    ||||||||| |||||||||||| ||||  || |||| ||||||||||||||||| ||||||| ||||||    
T  13342060 tcgacactaataataatttgagcaaatggaaatgtt-gaatgtaaccacatgtggcagtgttttgtcag 13342127  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 393
Target Start/End: Complemental strand, 43609869 - 43609790
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgtgtcagtgtttgacactgacacatgttg 393  Q
    ||||||||||||||||||| | |  |||||||||| ||||||||||  |||||| ||| |||| ||||| |||||||||||    
T  43609869 taataatttgagaaaataaca-taattgaatgtaatcacatgtgtccatgttgtatcaatgttggacaccgacacatgttg 43609790  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 356
Target Start/End: Original strand, 10042299 - 10042342
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtg 356  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||    
T  10042299 taataatttgtgaaaatagaagtgattgaatgtaaccacatgtg 10042342  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 13907170 - 13907223
Alignment:
Q  316 taatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgtgtc 369  Q
    ||||||||||||||| ||||| |||||  ||||||||| ||||| |||||||||    
T  13907170 taatttgagaaaatataagtggttgaacataaccacatatgtcaatgttgtgtc 13907223  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 303693 - 303737
Alignment:
Q  317 aatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagt 361  Q
    ||||||||||||| |||||  ||||||||||||||| ||||||||    
T  303693 aatttgagaaaatgaaagtaattgaatgtaaccacaagtgtcagt 303737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 6632428 - 6632470
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgt 355  Q
    |||||| || |||||||||||||| ||||||||||||||||||    
T  6632428 taataaattaagaaaataaaagtgattgaatgtaaccacatgt 6632470  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 355
Target Start/End: Complemental strand, 17937708 - 17937667
Alignment:
Q  314 aataatttgagaaaataaaagtgtttgaatgtaaccacatgt 355  Q
    ||||||||||||||||||||||| |||||| |||||| ||||    
T  17937708 aataatttgagaaaataaaagtggttgaatctaaccaaatgt 17937667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 369
Target Start/End: Complemental strand, 3262926 - 3262871
Alignment:
Q  313 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgttgtgtc 369  Q
    ||||||||||||||| | ||| | |||||||| |||||||||||||||||| |||||    
T  3262926 taataatttgagaaagtgaaa-tatttgaatgcaaccacatgtgtcagtgtcgtgtc 3262871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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