View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21157_low_8 (Length: 333)
Name: NF21157_low_8
Description: NF21157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21157_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 110 - 316
Target Start/End: Original strand, 9648720 - 9648926
Alignment:
| Q |
110 |
catcatcataactagtgattatcactataaagaataacaattagcatttcctagtcatgttattctagcttttttcttgcgcctttcgatttgattagca |
209 |
Q |
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| T |
9648720 |
catcatcataactagtgattatcactataaagaataacaattagcatttcctagtcatgttattctagcttttttcttgcgtctttcgatttgattagca |
9648819 |
T |
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| Q |
210 |
atttcattgatttcattgatatgatgttgcatgtgcctcccaggctgagaaaccttcttggaattctattgggatttttaaagtatccaatatttctggg |
309 |
Q |
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| T |
9648820 |
atttcattgatttcattgatatgatgttgcatgtgccccccaggctgagaaaccttcttggaattctattgggatttttaaagtatccaatatttctggg |
9648919 |
T |
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| Q |
310 |
aagacac |
316 |
Q |
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| T |
9648920 |
aagacac |
9648926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 117 - 313
Target Start/End: Complemental strand, 34738563 - 34738377
Alignment:
| Q |
117 |
ataactagtgattatcactataaagaataacaattagcatttcctagtcatgttattctagcttt-tttcttgcgcctttcgatttgattagcaatttca |
215 |
Q |
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||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| | |||||||| ||||||| | |||| | ||||||||||||| || |
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| T |
34738563 |
ataactagtgactatcactttaaagaataacaatgagcatttcctagtcatgttttactagctttgtttcttgtgtcttttgctttgattagcaatctcg |
34738464 |
T |
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| Q |
216 |
ttgatttcattgatatgatgttgcatgtgcctcccaggctgagaaaccttcttggaattctattgggatttttaaagtatccaatatttctgggaaga |
313 |
Q |
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| T |
34738463 |
ttgat---------aatatgttgcatgtgcc--ccaggctgagaaaccttcttggaattctattgggatttttaaagtatccaatatttctgggaaga |
34738377 |
T |
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