View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21158_low_1 (Length: 588)
Name: NF21158_low_1
Description: NF21158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21158_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 358 - 574
Target Start/End: Complemental strand, 39876992 - 39876776
Alignment:
| Q |
358 |
gtgaaaggctgtttttgcataagacaagttttgagacaaaagggaaaggctgtttggaaagtgcaagtgctatgtttttgcatcttggtattgtcatctg |
457 |
Q |
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| T |
39876992 |
gtgaaaggctgtttttgcataagacaagttttgagacaaaagggaaaggctgtttggatagtgcaagtgctatgtttttgcatcttagtattgtcatctg |
39876893 |
T |
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| Q |
458 |
gtgcactatcagccatcatgtcatggactaatttagaacagacaaattgaacgtgctcccattcagctgtataatatggattagggaattagaatcactc |
557 |
Q |
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| T |
39876892 |
gtgcactatcagccatcatgtcatggactaatttagaacagacaaattgaacgtgctcccattcagctgtataatatggattagggaattagaatcactc |
39876793 |
T |
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| Q |
558 |
ctcatcatgttaatgtt |
574 |
Q |
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| T |
39876792 |
ctcatcatgttaatgtt |
39876776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 39877349 - 39877152
Alignment:
| Q |
1 |
tatgattgcttttgctaaaaccagctataatatccatacatttttgtaatttattttatcgcatgacactgacgtctaatgtattataaatatatgaaac |
100 |
Q |
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| T |
39877349 |
tatgattgcttttgctaaaaccagctataatatccatacatttttgtaatttattttattgcatgacactgacgtctaatgtattataaatatatgaaac |
39877250 |
T |
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| Q |
101 |
tttaaaagcttcgtcaaaaacatctcctaaattttgctcataagaagtaccttgtgttatattttgaatgcataatatgctaccctagtttcagtctg |
198 |
Q |
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| T |
39877249 |
tttaaaagcttggtcaaaaacatctcctaaattttgctcataagaagtaccttgtgttatattttgaatgcataatatgataccctagtttcagtctg |
39877152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 39877081 - 39877047
Alignment:
| Q |
269 |
agagttgtacataaagcaatgaaaacaactatcac |
303 |
Q |
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| T |
39877081 |
agagttgtacataaagcaatgaaaacaactatcac |
39877047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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