View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21158_low_2 (Length: 527)

Name: NF21158_low_2
Description: NF21158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21158_low_2
NF21158_low_2
[»] chr4 (1 HSPs)
chr4 (124-249)||(11120703-11120823)
[»] chr5 (4 HSPs)
chr5 (432-481)||(42119134-42119183)
chr5 (427-481)||(34230628-34230682)
chr5 (427-481)||(34238683-34238737)
chr5 (427-462)||(42125745-42125780)
[»] chr6 (1 HSPs)
chr6 (431-482)||(25520840-25520891)
[»] chr3 (1 HSPs)
chr3 (431-482)||(8525198-8525249)


Alignment Details
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 11120823 - 11120703
Alignment:
Q  124 actcaccacttttacagaatttaatttcccgttcactaaagcaaagaccatctttaaaactaaatttttcctttgaaaatttgtgctataaatatatacg 223  Q
    ||||||||| |||| ||||||||||||||| |||||||| ||| ||||||||   |||| |||| ||| |||||||||||||||||||||||||| | |     
T  11120823 actcaccacctttaaagaatttaatttcccattcactaa-gcagagaccatc---aaaattaaagtttgcctttgaaaatttgtgctataaatattttc- 11120729  T
Q  224 ttgtgttccttatcatttcatccaca 249  Q
    |||||||||||| |||||||||||||    
T  11120728 ttgtgttccttaccatttcatccaca 11120703  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 432 - 481
Target Start/End: Complemental strand, 42119183 - 42119134
Alignment:
Q  432 atcatgatgagagctctgctctgcttcagtttaagtcctccttcactata 481  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42119183 atcatgatgagagctctgctctgcttcagttcaagtcctccttcactata 42119134  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 427 - 481
Target Start/End: Original strand, 34230628 - 34230682
Alignment:
Q  427 atgtcatcatgatgagagctctgctctgcttcagtttaagtcctccttcactata 481  Q
    |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||    
T  34230628 atgtcatcatgatgagagctttgctttgcttcagttcaagtcctccttcactata 34230682  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 427 - 481
Target Start/End: Original strand, 34238683 - 34238737
Alignment:
Q  427 atgtcatcatgatgagagctctgctctgcttcagtttaagtcctccttcactata 481  Q
    |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||    
T  34238683 atgtcatcatgatgagagctttgctttgcttcagttcaagtcctccttcactata 34238737  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 462
Target Start/End: Complemental strand, 42125780 - 42125745
Alignment:
Q  427 atgtcatcatgatgagagctctgctctgcttcagtt 462  Q
    ||||||||||||||||||||||||| ||||||||||    
T  42125780 atgtcatcatgatgagagctctgctttgcttcagtt 42125745  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 431 - 482
Target Start/End: Original strand, 25520840 - 25520891
Alignment:
Q  431 catcatgatgagagctctgctctgcttcagtttaagtcctccttcactataa 482  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  25520840 catcgtgatgagagctctgctctgcttcagtttaaatcctccttcactataa 25520891  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 8525249 - 8525198
Alignment:
Q  431 catcatgatgagagctctgctctgcttcagtttaagtcctccttcactataa 482  Q
    |||||| |||||||||||||| ||||||| || ||||| |||||||||||||    
T  8525249 catcattatgagagctctgctttgcttcatttcaagtcatccttcactataa 8525198  T

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