View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21158_low_5 (Length: 428)
Name: NF21158_low_5
Description: NF21158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21158_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 53 - 412
Target Start/End: Complemental strand, 53712841 - 53712486
Alignment:
| Q |
53 |
tcgacatcgcttataatcctcatcaaagataatgaaagctgtaaagcatgtgtattattggacacttgccatttcgaggttcctttcaagttttttgagg |
152 |
Q |
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| T |
53712841 |
tcgacatcgcttataatcctcatcaaagataatgaaagctgtaaagcatgtgtattattggacacttgccatttcgaggttcctttcaagttttttgagg |
53712742 |
T |
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| Q |
153 |
gaaatttttaacctttattattttatacgtaattgatgacatttnnnnnnnnnnnnnnnnn-tattttggtatatatatatttctcatgaccgtgcaatg |
251 |
Q |
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| T |
53712741 |
gaaatttttaacctttattattttatacgtaattgatgacatttaaaaaaaaaaaaaaaaaatcttttggtatatatatatttctcatgaccgtgcaatg |
53712642 |
T |
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| Q |
252 |
caacgatcgtctcactgtacaattcgatccaattaatctaccaaaatgaacatctgcacgtcttaaactccacttatgaatcaaatacatttaatcaaat |
351 |
Q |
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| T |
53712641 |
caacgatcgtctcactgtacaattcgatccaattaatctaccaaattgaacatctgcacgtcttaaactccacttataaatcaaatacatttaatcaaat |
53712542 |
T |
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| Q |
352 |
ataatataataattggattaaagcactgaaactgcaagccaccaatttccggtcccaacat |
412 |
Q |
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| T |
53712541 |
at-----aataattggattaaagcactgaaactgcaagccaccaatttccggtcccaacat |
53712486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 6817000 - 6817055
Alignment:
| Q |
226 |
tatatatttctcatgaccgtgcaatgcaacgatcgtctcactgtacaattcgatcc |
281 |
Q |
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| T |
6817000 |
tatatagttctcatgaccttgcaatgcaacgatcgtctgattgtacaattcgatcc |
6817055 |
T |
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