View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21158_low_6 (Length: 365)
Name: NF21158_low_6
Description: NF21158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21158_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 55453165 - 55452827
Alignment:
| Q |
8 |
cagcacagagacatacttatgcggtgttcgagctcctaatagaactgcagtgaacctgtatccaacnnnnnnnaccataactccacaaggaactcaggat |
107 |
Q |
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| T |
55453165 |
cagcacagagacatacttatgcggtgttcgagctcctaatagaactgcagttaacctgtatccaactttttttaccataactccacaaggaactcaggat |
55453066 |
T |
|
| Q |
108 |
ctggaaatacaaatcaatgtcactcaaccaagtgaagattttagctttggtgaaattgttttggcaggaagtatgaaccacatagtaagaataactttgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55453065 |
ctggaaatacaaatcaatgtcactcaaccaagtgaagattttagctttggtgaaattgttttggcaggaagtatgaaccacatagtaagaataactttgt |
55452966 |
T |
|
| Q |
208 |
cagttgtgccagtttcaacacaatgactattgaataccgaatgcactgtaaatcgtcattttagtccctaagactaggtttggatatcttgtgcaaatgt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55452965 |
cagttgtgccagtttcaacacaatgactattgaataccgaatgcactgtaaatcgtcattttagtccctaagactatgtttggatatcttgtgcaaatgt |
55452866 |
T |
|
| Q |
308 |
aatagaatggagcaaaacaaataaaaattaagttttcac |
346 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
55452865 |
aatagaatggagaaaaacaaataaaaattaagttttcac |
55452827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 55705157 - 55705363
Alignment:
| Q |
8 |
cagcacagagacatacttatgcggtgttcgagctcctaatagaactgcagtgaacctgtatccaacnnnnnnn-accataactccacaaggaactcagga |
106 |
Q |
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|||||||||||||||||| |||||||||| |||||||||| |||||||||| ||| |||||||||| |||||||||||||| |||| | ||| |
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| T |
55705157 |
cagcacagagacatacttgtgcggtgttctagctcctaatggaactgcagttaacttgtatccaacttttttttaccataactccacatagaacacggga |
55705256 |
T |
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| Q |
107 |
tctggaaatacaaatcaatgtcactcaaccaagtgaagattttagctttggtgaaattgttttggcaggaagtatgaaccacatagtaagaataactttg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55705257 |
tctggaaatacaaatcaatgtcactcaaccaagtgaagattttagctttggtgaaattgttttggcaggaagtatgaaccacatagtaagaataactttg |
55705356 |
T |
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| Q |
207 |
tcagttg |
213 |
Q |
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||||||| |
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| T |
55705357 |
tcagttg |
55705363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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