View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21159_high_5 (Length: 309)

Name: NF21159_high_5
Description: NF21159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21159_high_5
NF21159_high_5
[»] chr5 (3 HSPs)
chr5 (3-297)||(39806288-39806582)
chr5 (243-286)||(26203784-26203827)
chr5 (33-63)||(39806191-39806221)
[»] chr8 (2 HSPs)
chr8 (228-278)||(17777813-17777863)
chr8 (230-290)||(21218486-21218546)
[»] chr7 (2 HSPs)
chr7 (213-275)||(34877252-34877313)
chr7 (238-286)||(2670751-2670799)
[»] chr1 (4 HSPs)
chr1 (228-278)||(19440067-19440117)
chr1 (228-286)||(7492279-7492337)
chr1 (228-275)||(18089003-18089050)
chr1 (228-271)||(27091290-27091333)
[»] chr3 (3 HSPs)
chr3 (236-291)||(10687153-10687208)
chr3 (235-286)||(4478163-4478214)
chr3 (243-291)||(51134793-51134841)
[»] chr2 (2 HSPs)
chr2 (175-271)||(34341569-34341664)
chr2 (187-286)||(34415082-34415183)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 3 - 297
Target Start/End: Original strand, 39806288 - 39806582
Alignment:
Q  3 ctataaagtataagttttaacatagtctagggtcaatttgaattatacaattcgaacaattctgatatctttcagatcatatggtccgaacccgttcaga 102  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  39806288 ctataaaatacaagttttaacatagtctagggtcaatttgaattatacaattcgaacaattctgatatctttcaaatcatatggtccgaaccagttcaga 39806387  T
Q  103 ttatggacggttgcttggtcagtaagactgcctcattgaacatgtgttttttgggctggtcacttttaccctcattgatggattgttacactctatgaac 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39806388 ttatggacggttgcttggtcagtaagactgcctcattgaacatgtgttttttgggctggtcacttttaccctcattgatggattgttacactctatgaac 39806487  T
Q  203 tcatttgtcgcaaatttcccctacaaaatactcacccatccttcacaaattcccattccatctcacattctcttcttctcttttataatattctt 297  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39806488 tcatttgtcacaaatttcccctacaaaatactcacccatccttcacaaattcccattccatctcacattctcttcttctcttttataattttctt 39806582  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 26203827 - 26203784
Alignment:
Q  243 cttcacaaattcccattccatctcacattctcttcttctctttt 286  Q
    |||||||||||| |||||||||||||||||| | ||||||||||    
T  26203827 cttcacaaattctcattccatctcacattctatccttctctttt 26203784  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 39806191 - 39806221
Alignment:
Q  33 ggtcaatttgaattatacaattcgaacaatt 63  Q
    |||||||||||||||||||||||||||||||    
T  39806191 ggtcaatttgaattatacaattcgaacaatt 39806221  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 17777813 - 17777863
Alignment:
Q  228 aaatactcacccatccttcacaaattcccattccatctcacattctcttct 278  Q
    |||||| |||||||||||||||||| | |||||||||||||||||||||||    
T  17777813 aaatacccacccatccttcacaaatcctcattccatctcacattctcttct 17777863  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 21218486 - 21218546
Alignment:
Q  230 atactcacccatccttcacaaattcccattccatctcacattctcttcttctcttttataa 290  Q
    ||||||| | ||||||| ||||||| |||||||||| ||||||| |  |||||||||||||    
T  21218486 atactcaacaatccttcgcaaattctcattccatcttacattctttctttctcttttataa 21218546  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 34877313 - 34877252
Alignment:
Q  213 caaatttcccctacaaaatactcacccatccttcacaaattcccattccatctcacattctct 275  Q
    ||||||||||||| ||| |||| || |||||||||||||||| ||||||||||||||||||||    
T  34877313 caaatttcccctataaa-tacttactcatccttcacaaattctcattccatctcacattctct 34877252  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 2670751 - 2670799
Alignment:
Q  238 ccatccttcacaaattcccattccatctcacattctcttcttctctttt 286  Q
    ||||||||||||||||| |||| ||||||| ||||||| |||| |||||    
T  2670751 ccatccttcacaaattctcatttcatctcagattctctccttcactttt 2670799  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 19440117 - 19440067
Alignment:
Q  228 aaatactcacccatccttcacaaattcccattccatctcacattctcttct 278  Q
    |||||| |||||||||||||||||| | |||||||||||||||||||||||    
T  19440117 aaatacccacccatccttcacaaatcctcattccatctcacattctcttct 19440067  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 7492337 - 7492279
Alignment:
Q  228 aaatactcacccatccttcacaaattcccattccatctcacattctcttcttctctttt 286  Q
    ||||||||| | |||||||| |||||| |||||||||||| ||||||| ||||||||||    
T  7492337 aaatactcatcaatccttcataaattctcattccatctcagattctctccttctctttt 7492279  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 18089003 - 18089050
Alignment:
Q  228 aaatactcacccatccttcacaaattcccattccatctcacattctct 275  Q
    |||||| ||| ||| |||||||||||| ||||||||||||||||||||    
T  18089003 aaatacccactcattcttcacaaattctcattccatctcacattctct 18089050  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 27091333 - 27091290
Alignment:
Q  228 aaatactcacccatccttcacaaattcccattccatctcacatt 271  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||    
T  27091333 aaatacacacccatccttcacaaattctcattctatctcacatt 27091290  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 10687153 - 10687208
Alignment:
Q  236 acccatccttcacaaattcccattccatctcacattctcttcttctcttttataat 291  Q
    ||||||||||||||||||| |||| ||||||||||| ||  |||||||||||||||    
T  10687153 acccatccttcacaaattctcatttcatctcacattttcgccttctcttttataat 10687208  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 4478163 - 4478214
Alignment:
Q  235 cacccatccttcacaaattcccattccatctcacattctcttcttctctttt 286  Q
    |||| ||||||||||||||  ||||||||||||||||||||| |||| ||||    
T  4478163 caccaatccttcacaaattatcattccatctcacattctctttttctatttt 4478214  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 51134841 - 51134793
Alignment:
Q  243 cttcacaaattcccattccatctcacattctcttcttctcttttataat 291  Q
    |||||||||||| ||||| | ||||||||||||  ||||||||||||||    
T  51134841 cttcacaaattctcattctaactcacattctctctttctcttttataat 51134793  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 34341569 - 34341664
Alignment:
Q  175 cattgatggattgttacactctatgaactcatttgtcgcaaatttcccctacaaaatactcacccatccttcacaaattcccattccatctcacatt 271  Q
    ||||||||||  |||||||| |||  |||||||  || |||||  |||||| ||| ||||||| ||||||||||||||||  |||||||||||||||    
T  34341569 cattgatggagcgttacactttatatactcattcttcacaaatcccccctataaa-tactcactcatccttcacaaattcttattccatctcacatt 34341664  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 34415183 - 34415082
Alignment:
Q  187 gttacactctatgaactcatttgtcgcaaatttcccctacaaaatactcacccatccttcacaaattcccattc---catctcacattctcttcttctct 283  Q
    ||||||||||||| |||||||  |  |||||||||||||  ||||||||| | |||||  |||| |||||||||   |||||||||||||| | ||||||    
T  34415183 gttacactctatgcactcattctttacaaatttccccta-taaatactcatcaatcctcaacaatttcccattcactcatctcacattctcgttttctct 34415085  T
Q  284 ttt 286  Q
    |||    
T  34415084 ttt 34415082  T

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