View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21159_low_10 (Length: 248)

Name: NF21159_low_10
Description: NF21159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21159_low_10
NF21159_low_10
[»] chr7 (8 HSPs)
chr7 (9-157)||(1885376-1885524)
chr7 (9-139)||(1875119-1875250)
chr7 (214-248)||(1885581-1885615)
chr7 (214-248)||(2144556-2144590)
chr7 (214-248)||(5937438-5937472)
chr7 (214-248)||(44317303-44317337)
chr7 (216-248)||(2143870-2143902)
chr7 (220-248)||(7241011-7241039)
[»] chr3 (3 HSPs)
chr3 (214-248)||(14338500-14338534)
chr3 (220-248)||(12704674-12704702)
chr3 (220-248)||(41319327-41319355)
[»] chr1 (3 HSPs)
chr1 (216-248)||(24462287-24462319)
chr1 (216-248)||(18946051-18946083)
chr1 (220-248)||(30847737-30847765)
[»] chr4 (5 HSPs)
chr4 (214-245)||(10634998-10635029)
chr4 (214-248)||(13307885-13307919)
chr4 (214-248)||(49887764-49887798)
chr4 (215-248)||(10164871-10164904)
chr4 (214-247)||(28663500-28663533)
[»] chr8 (2 HSPs)
chr8 (214-248)||(34073995-34074029)
chr8 (216-248)||(31119097-31119129)
[»] chr6 (5 HSPs)
chr6 (214-248)||(1334669-1334703)
chr6 (214-248)||(6751899-6751933)
chr6 (214-248)||(10031578-10031612)
chr6 (214-248)||(19369825-19369859)
chr6 (214-248)||(29959183-29959217)
[»] chr5 (4 HSPs)
chr5 (214-248)||(10010562-10010596)
chr5 (214-248)||(21319962-21319996)
chr5 (214-248)||(30080518-30080552)
chr5 (220-248)||(38749580-38749608)
[»] chr2 (1 HSPs)
chr2 (214-248)||(43586022-43586056)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 1885376 - 1885524
Alignment:
Q  9 gaagaatatggtgatagccaaacagccataccttctctttcaatttccactacagagcgccttacaattggatatttttataatgatcaaggttctctaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1885376 gaagaatatggtgatagccaaacagccataccttctctttcaatttccactacagagtgccttacaattggatatttttataatgatcaaggttctctaa 1885475  T
Q  109 atgacaatcctttcgtgacgtttaacattagtgattatcagtcatgaag 157  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1885476 atgacaatcctttcgtgacgtttaacattagtgattatcggtcatgaag 1885524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 1875119 - 1875250
Alignment:
Q  9 gaagaatatggtgatagccaaacagccataccttctctttcaatttccactacagagcgccttacaattggatattttt-ataatgatcaaggttctcta 107  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||    
T  1875119 gaagaatatggtgatggccaaacagctataccttctctttcaatttccactacatagcgccttaccattggatttttttgataatgatcaaggttctcta 1875218  T
Q  108 aatgacaatcctttcgtgacgtttaacattag 139  Q
    ||||| |||||| || ||||||||||| ||||    
T  1875219 aatgaaaatcctctcatgacgtttaactttag 1875250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 1885581 - 1885615
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    |||||||||||||||||||||||||||||||||||    
T  1885581 taaaattttgaaaaaatgacataattcaatgtaat 1885615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 2144590 - 2144556
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    ||||||||||| |||||||||||||||||||||||    
T  2144590 taaaattttgagaaaatgacataattcaatgtaat 2144556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 5937472 - 5937438
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    ||||||||||| |||||||||||||||||||||||    
T  5937472 taaaattttgagaaaatgacataattcaatgtaat 5937438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 44317337 - 44317303
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    ||||||||| |||||||||||||||||||||||||    
T  44317337 taaaattttaaaaaaatgacataattcaatgtaat 44317303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 2143902 - 2143870
Alignment:
Q  216 aaattttgaaaaaatgacataattcaatgtaat 248  Q
    ||||||||| |||||||||||||||||||||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaat 2143870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 7241039 - 7241011
Alignment:
Q  220 tttgaaaaaatgacataattcaatgtaat 248  Q
    |||||||||||||||||||||||||||||    
T  7241039 tttgaaaaaatgacataattcaatgtaat 7241011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 14338534 - 14338500
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    |||||||||||||||||||||||||||||||||||    
T  14338534 taaaattttgaaaaaatgacataattcaatgtaat 14338500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 12704702 - 12704674
Alignment:
Q  220 tttgaaaaaatgacataattcaatgtaat 248  Q
    |||||||||||||||||||||||||||||    
T  12704702 tttgaaaaaatgacataattcaatgtaat 12704674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 41319355 - 41319327
Alignment:
Q  220 tttgaaaaaatgacataattcaatgtaat 248  Q
    |||||||||||||||||||||||||||||    
T  41319355 tttgaaaaaatgacataattcaatgtaat 41319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 24462319 - 24462287
Alignment:
Q  216 aaattttgaaaaaatgacataattcaatgtaat 248  Q
    |||||||||||||||||||||||||||||||||    
T  24462319 aaattttgaaaaaatgacataattcaatgtaat 24462287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 18946083 - 18946051
Alignment:
Q  216 aaattttgaaaaaatgacataattcaatgtaat 248  Q
    ||||||||| |||||||||||||||||||||||    
T  18946083 aaattttgagaaaatgacataattcaatgtaat 18946051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 30847765 - 30847737
Alignment:
Q  220 tttgaaaaaatgacataattcaatgtaat 248  Q
    |||||||||||||||||||||||||||||    
T  30847765 tttgaaaaaatgacataattcaatgtaat 30847737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 10634998 - 10635029
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgt 245  Q
    ||||||||||||||||||||||||||||||||    
T  10634998 taaaattttgaaaaaatgacataattcaatgt 10635029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 13307885 - 13307919
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    ||||||||||| |||||||||||||||||||||||    
T  13307885 taaaattttgagaaaatgacataattcaatgtaat 13307919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 49887764 - 49887798
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    |||||||||||| ||||||||||||||||||||||    
T  49887764 taaaattttgaagaaatgacataattcaatgtaat 49887798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 10164904 - 10164871
Alignment:
Q  215 aaaattttgaaaaaatgacataattcaatgtaat 248  Q
    ||||| ||||||||||||||||||||||||||||    
T  10164904 aaaatcttgaaaaaatgacataattcaatgtaat 10164871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 28663500 - 28663533
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaa 247  Q
    ||||||||||| ||||||||||||||||||||||    
T  28663500 taaaattttgagaaaatgacataattcaatgtaa 28663533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 34074029 - 34073995
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    |||||||||||||||||||||||||| ||||||||    
T  34074029 taaaattttgaaaaaatgacataatttaatgtaat 34073995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 31119097 - 31119129
Alignment:
Q  216 aaattttgaaaaaatgacataattcaatgtaat 248  Q
    ||||||||| |||||||||||||||||||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaat 31119129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 1334669 - 1334703
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    |||||||||||||||| ||||||||||||||||||    
T  1334669 taaaattttgaaaaaaggacataattcaatgtaat 1334703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 6751933 - 6751899
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    ||||||||||| |||||||||||||||||||||||    
T  6751933 taaaattttgagaaaatgacataattcaatgtaat 6751899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 10031578 - 10031612
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    ||||||||||| |||||||||||||||||||||||    
T  10031578 taaaattttgagaaaatgacataattcaatgtaat 10031612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 19369825 - 19369859
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    ||||||||||| |||||||||||||||||||||||    
T  19369825 taaaattttgagaaaatgacataattcaatgtaat 19369859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 29959183 - 29959217
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    ||||||||||| |||||||||||||||||||||||    
T  29959183 taaaattttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 10010562 - 10010596
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    |||||||||||||||||||||||||||| ||||||    
T  10010562 taaaattttgaaaaaatgacataattcattgtaat 10010596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 21319996 - 21319962
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    ||||||||||||||||||| |||||||||||||||    
T  21319996 taaaattttgaaaaaatgatataattcaatgtaat 21319962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 30080552 - 30080518
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    ||||||||||| |||||||||||||||||||||||    
T  30080552 taaaattttgagaaaatgacataattcaatgtaat 30080518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 38749608 - 38749580
Alignment:
Q  220 tttgaaaaaatgacataattcaatgtaat 248  Q
    |||||||||||||||||||||||||||||    
T  38749608 tttgaaaaaatgacataattcaatgtaat 38749580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 43586056 - 43586022
Alignment:
Q  214 taaaattttgaaaaaatgacataattcaatgtaat 248  Q
    ||||||||||| |||||||||||||||||||||||    
T  43586056 taaaattttgagaaaatgacataattcaatgtaat 43586022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University