View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21159_low_12 (Length: 243)
Name: NF21159_low_12
Description: NF21159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21159_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 31115021 - 31114804
Alignment:
| Q |
13 |
atgatttcggccttgatcaacgtggataagggtttacataaccctaccactctatatatggactcaattaattgtaggttttcaatactccaattcagga |
112 |
Q |
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| T |
31115021 |
atgatttcggccttgatcaacgtggataagggtttacataaccctaccactctatatatggactcaattaattgtaggttttcaatactccaattcagga |
31114922 |
T |
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| Q |
113 |
cacctagagagaagtttcgtgaaatcttcctcaacttcgaaataaatatcacacaaccgtagggttttgagaaaaggaagttcaacagaacaatgaaaca |
212 |
Q |
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| T |
31114921 |
cacctagagagaagtttcgtgaaatcttcctcaacttcgaaataaatatcacacaaccgtagggttttgagaaaaggaagttcaacagaacaatgaaaca |
31114822 |
T |
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| Q |
213 |
tagctactacatgtatat |
230 |
Q |
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|||||||||||||||||| |
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| T |
31114821 |
tagctactacatgtatat |
31114804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 212
Target Start/End: Complemental strand, 31088923 - 31088793
Alignment:
| Q |
82 |
aattgtaggttttcaatactccaattcaggacacctagagagaagtttcgtgaaatcttcctcaacttcgaaataaatatcacacaaccgtagggttttg |
181 |
Q |
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|||||||| ||| |||| ||||||||| ||||||| ||||| ||||||| ||||||| | | |||||||||||||||||| | |||| |||| |||||| |
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| T |
31088923 |
aattgtagttttccaatcctccaattcgggacacccagagataagtttcatgaaatccttcccaacttcgaaataaatattaaacaattgtagagttttg |
31088824 |
T |
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| Q |
182 |
agaaaaggaagttcaacagaacaatgaaaca |
212 |
Q |
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| T |
31088823 |
agcataggaagatctacataacaatgaaaca |
31088793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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