View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21159_low_13 (Length: 239)
Name: NF21159_low_13
Description: NF21159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21159_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 28600114 - 28600335
Alignment:
| Q |
18 |
tcattttggcaaccttgaccccactatcatcctccatggttatctcatcatttttcactcttggtgaaacttgtttccctccacagataatgaataattc |
117 |
Q |
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| T |
28600114 |
tcattttggcaaccttgaccccactatcatcctccatggttatctcatcatttttcactcttggtgaaacttgtttccctccacagataatgaataattc |
28600213 |
T |
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| Q |
118 |
acagaaatcaggcttgtgctgatgaacatagaataatccattcatggcatctttagatttcctatacaagatgaaagtataaggagaatcattcaagagt |
217 |
Q |
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| T |
28600214 |
acagaaatcaggcttgtgctgatgaacatagaataatccattcatggcatctttagatttcctatacaagatgaaagtataaggagaatcattcaagagt |
28600313 |
T |
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| Q |
218 |
tccatgcacaaacatttatatt |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
28600314 |
tccatgcacaaacatttatatt |
28600335 |
T |
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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 13723063 - 13722900
Alignment:
| Q |
18 |
tcattttggcaaccttgaccccactatcatcctccatggttatctcatcatttttcactcttggtgaaacttgtttccctccacagataatgaataattc |
117 |
Q |
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||||||| |||||| |||| |||||||||||||||||| || | |||||||| || | ||| | |||||||||| || ||||| |||||||||||||| |
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| T |
13723063 |
tcattttagcaaccatgactccactatcatcctccatgattttttcatcattgtttccccttagaaaaacttgtttgccaccacatataatgaataattc |
13722964 |
T |
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| Q |
118 |
acagaaatcaggcttgtgctgatgaacatagaataatccattcatggcatctttagatttccta |
181 |
Q |
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| T |
13722963 |
acataaactaggcttgtgttgatgaacatagaacaatccactaatagcaccttttgatttccta |
13722900 |
T |
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