View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21159_low_3 (Length: 408)
Name: NF21159_low_3
Description: NF21159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21159_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 6171435 - 6171798
Alignment:
| Q |
13 |
aatatactactaattatgttgtctaatgcataaagttcaatatttctaattaataacgcaagttgtgttccttgtacctttgttcaacaaattgtacttg |
112 |
Q |
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| T |
6171435 |
aatatactactaattatgttgtctaatgcataaagttcaatatttctaattaatgtcgcaagttgtgttccttgtacctttgttcaacaaattgtacttg |
6171534 |
T |
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| Q |
113 |
aattaacaaccacacatggtctccaatttcaattgcttgtcctttctgcgacatccatctacttaagaaaatgcaaaacaaatagtaacacttatatgct |
212 |
Q |
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| T |
6171535 |
aattaacaaccacacatggtctccaatttcaattgcttgtcctttctgcgacattcatctacttaagaaaatgcaaaacaaattgtaacacttatatgct |
6171634 |
T |
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| Q |
213 |
tctcagcttcaacaataccaaacttcaataataccaaatagcttcacaatttttctaagcatcttcattcgacaatccatctccaatcaaaatacaataa |
312 |
Q |
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| T |
6171635 |
tctcagcttcaacaataccaaacttcaataataccaaatagcttcacaatttttctaagcatcttcattcgacaatccatctccaatcaaaatacaataa |
6171734 |
T |
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| Q |
313 |
caaatttacatctctaatttactcttgatatgagaccctccaccttctgattttccatttatga |
376 |
Q |
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| T |
6171735 |
caaatttacatctctaatttactcttgatatgagaccctccaccttctgattttccatttatga |
6171798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 30489582 - 30489626
Alignment:
| Q |
327 |
taatttactcttgatatgagaccctccaccttctgattttccatt |
371 |
Q |
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| T |
30489582 |
taatttacacttgatatgagcccctcaaccttctgactttccatt |
30489626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 30516182 - 30516225
Alignment:
| Q |
327 |
taatttactcttgatatgagaccctccaccttctgattttccatt |
371 |
Q |
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| T |
30516182 |
taatttacacttgatatgag-ccctcaaccttctgattttccatt |
30516225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 29265475 - 29265523
Alignment:
| Q |
328 |
aatttactcttgatatgagaccctccaccttctgattttccatttatga |
376 |
Q |
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| T |
29265475 |
aatttacacttgatatgagcccctcaaccttctcattttccattcatga |
29265523 |
T |
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