View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21159_low_4 (Length: 392)
Name: NF21159_low_4
Description: NF21159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21159_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 29788257 - 29788619
Alignment:
| Q |
14 |
cctgtggagtagagggaatttgataaatattttgtgaatctagaaacctgaccaagagttcattgtttgagcttaaaatatccaatgcatcttcaaattg |
113 |
Q |
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| T |
29788257 |
cctgtggagtagagggaatttgataaatattttgtgaatctagaaacctgaccaagagttcattgtttgagcttaaaatatccaatgcatcttcaaattg |
29788356 |
T |
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| Q |
114 |
cttcgattggcgcagcgtctcatctgttgacagatattttgcttcaatgaatttctgacgaacgagagccatcttcccctcatcaacatcttccctccac |
213 |
Q |
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| T |
29788357 |
cttcgattggcgcagcgtctcatctgttgacagatattttgcttcaatgaatttctgacgaacgagagccatcttcccctcatcaacatcttccctccac |
29788456 |
T |
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| Q |
214 |
cttcctctctgagattgcatccatgtttcatatccatctttgtaatcaacctgttctgtgcttggatgatgaacttcatgaagcattcccttatccatca |
313 |
Q |
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| T |
29788457 |
cttcctctctgagattgcatccatgtttcatatccatctttgtaatcaacttgttctgtgcttggatgatgaaattcatgaagcattcccttatccatca |
29788556 |
T |
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| Q |
314 |
taaacctatcttccactttccaatgtttcaatggccaccctaaatgaccatacatgtcttgat |
376 |
Q |
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| T |
29788557 |
taaacctatcttccactttccaatgtttcaatggccaccctaaatgaccatacatgtcttgat |
29788619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 328
Target Start/End: Complemental strand, 39872236 - 39872140
Alignment:
| Q |
226 |
gattgcatccatgtttcatatccatctttgtaatcaacctgttctgtgcttggatgatgaacttcatgaagcattcccttatccatcataaacctatctt |
325 |
Q |
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| T |
39872236 |
gattgcagccatatttcataaatatctttgtaagcaacctgttctctgctcg---gatgaacttcatgaagcatttccttgtc---cataaacctatctt |
39872143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 206
Target Start/End: Complemental strand, 39872413 - 39872289
Alignment:
| Q |
82 |
gagcttaaaatatccaatgcatcttcaaattgcttcgattggcgcagcgtctcatctgttgacagatattttgcttcaatgaatttctgacgaacgagag |
181 |
Q |
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| T |
39872413 |
gagcttaaaacttccaatgtttcctcaaactccttcgattgacgtaacctctcatctgtagacagacgctttgcttccatgaatttttggcggataagag |
39872314 |
T |
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| Q |
182 |
ccatcttcccctcatcaacatcttc |
206 |
Q |
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| T |
39872313 |
ccatcttcttctcattaacatcttc |
39872289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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