View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21159_low_6 (Length: 308)
Name: NF21159_low_6
Description: NF21159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21159_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 41075355 - 41075075
Alignment:
| Q |
16 |
atacacacataagtattcc----accacttagaccagacccttaagatagtccaaaaggaaccaggagaactctgatacactagcatcacctccatcgtg |
111 |
Q |
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| T |
41075355 |
atacacacataagtattcctttcaccacttagaccagacacttaagatagtccaaaaggaatcaggagaactctgatacactagcatcacctccatcgtg |
41075256 |
T |
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| Q |
112 |
aattcaaaggaataggtacctcactcatgtatactccaaaaaacaaccactcaataaccggataccaatcaaatttgccttcatggtaccaataaccttt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41075255 |
aattcaaaggaataggtacctcactcatgtatactccaaaaaacaaccactcaataaccggataccaatcaaatttgcctttatggtaccaataaccttt |
41075156 |
T |
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| Q |
212 |
gttactccttgaaagtagtaacacagacatgcttaaaaaccaccaaataatccaagcatacaagctctcgttgaatataat |
292 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
41075155 |
gttactccttgaaagtagtaacacagacatacttaaaaatcaccaaataatccaagcatacaagctctcgttaaatataat |
41075075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 41086836 - 41086568
Alignment:
| Q |
16 |
atacacacataagtattccaccacttagaccagacccttaagatagtccaaaa-ggaaccaggagaactctgatacactagcatcacctccatcgtgaat |
114 |
Q |
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|||||||||| |||||||||||| ||| |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||| |
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| T |
41086836 |
atacacacatcagtattccaccatttacaccagacccttacaatagtccaaaaaggaaccaggagaactctaatacactagcaacacctccattatgaat |
41086737 |
T |
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| Q |
115 |
tcaaaggaataggtacctcactcatgtatactccaaaaaacaaccactcaataaccggataccaatcaaatttgccttcatggtaccaataacctttgtt |
214 |
Q |
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| T |
41086736 |
tcagaggaataggtacctcactcatgtatactcaaaaaaacaaccaatcaataaccggataccaatcaaatttgccttcatggtacc---atcctttg-t |
41086641 |
T |
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| Q |
215 |
actccttgaaagtagtaacacagacatgcttaaaaaccaccaaataatccaagcatacaagctctcgttgaatataat |
292 |
Q |
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|||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |||| ||| |||||||| |
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| T |
41086640 |
actccttgaaagtagtaa-----acatacttaaaaactaccaaataatccaagcatacaaactctggttaaatataat |
41086568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 48297418 - 48297170
Alignment:
| Q |
16 |
atacacacataagtattccaccacttagaccagacccttaagatagtccaa-aaggaaccaggagaactctgatacactagcatcacctccatcgtgaat |
114 |
Q |
| |
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|||||||||||||||||||||| |||| || ||||||||| ||| ||||| ||||||| ||||||||||| |||||||||||||||||||||| ||||| |
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| T |
48297418 |
atacacacataagtattccaccgcttacactagacccttacgatggtccaggaaggaactaggagaactctaatacactagcatcacctccatcatgaat |
48297319 |
T |
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| Q |
115 |
tcaaaggaataggtacctcactcatgtatactccaaaaaacaaccactcaataaccggataccaatcaaatttgccttcatggtaccaataacctttgtt |
214 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||| | |||| |||||||||| |
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| T |
48297318 |
tcataggaataggtacctcaatcatgtatactccaaaaaacagccaatcaataataggataccaatcaaattttcctttcggatacc---aacctttgtt |
48297222 |
T |
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| Q |
215 |
actccttgaaagtagtaacacagacatgcttaaaaaccaccaaataatccaa |
266 |
Q |
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|||||||||||||| |||| | |||| |||||||||||||||||||||||| |
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| T |
48297221 |
gctccttgaaagtagaaacataaacatacttaaaaaccaccaaataatccaa |
48297170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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