View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21159_low_7 (Length: 283)
Name: NF21159_low_7
Description: NF21159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21159_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 1161289 - 1161041
Alignment:
| Q |
13 |
ataggtgtattgttaacaaatcacgtcaattgaccactggcattgacttttccacaaataaacttctt-cttgnnnnnnnagaaaataacttgtatcaat |
111 |
Q |
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| T |
1161289 |
ataggtgtattgttaacaaatcacgtcaattgaccactggcattgacttttccacaaataaacttcttactt--ttttttagaaaataacttgtatcaat |
1161192 |
T |
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| Q |
112 |
ttccataaataaacttatgtaattctgtaaaaatannnnnnnnagcaaaatcagtgacttaaatgacgtgatcaaattgcttatttttattgaaagggat |
211 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1161191 |
ttccataaataaacttatgtaattctgtaaaaatattttttttagcaaaatcagtgacttaaatgacgtgatcaaattgcttatttttattgaaagggat |
1161092 |
T |
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| Q |
212 |
tcatttgtttattgtttatatcgtagatatctctccttcaagtttgttccc |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1161091 |
tcatttgtttattgtttatatcgtagatatctctccttcaagtttgttccc |
1161041 |
T |
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