View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2115_low_1 (Length: 644)
Name: NF2115_low_1
Description: NF2115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2115_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 68 - 381
Target Start/End: Complemental strand, 29603879 - 29603556
Alignment:
| Q |
68 |
actaagttgtaaatcaaattcatgttgcgatcttttatattg----------agctcaagtgccgctgatatgatctcaattgtggtcatgttgcagtct |
157 |
Q |
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| T |
29603879 |
actaagttgtaaatcaaattcatgttgcgatcttttatattgtgtacaattgagctcaagtgccgctgatataatctcaattgtggtcatgttgcagtct |
29603780 |
T |
|
| Q |
158 |
cagacacgaaattccttcattttgcaacctaaactgtggttgtgtatcccttttttgaaaaccttgcatgggagattcatctaagctttttccttcatta |
257 |
Q |
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| T |
29603779 |
cagacacgaaattccttcattttgcaacctaaactgtggttgtgtatcccttttttgaaaaccttgcatgcgagattcatctaagctttttccttcatta |
29603680 |
T |
|
| Q |
258 |
tatatggaactatctctgaaatagtagcgatgtatttaattatttaaggacacaatggaatagtggtaagaaaagcatatcaaataggttttttggagag |
357 |
Q |
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| T |
29603679 |
tatatggaactatctctgaaatattagcgatgtatttaattatttaaagacacaatggaatagtggtaagaaaagcatatcaaataggttttttggagag |
29603580 |
T |
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| Q |
358 |
tggcgcagtgctgagtttttcatt |
381 |
Q |
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| T |
29603579 |
tggcacagtgctgagtttttcatt |
29603556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 404 - 629
Target Start/End: Complemental strand, 29603569 - 29603344
Alignment:
| Q |
404 |
ctgagtttttcatttcatactttatgatttctcttttattgtgtttgaagttaatggtttcatttattttctataaaactcttcccatccttacaatagt |
503 |
Q |
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| T |
29603569 |
ctgagtttttcatttcatactttatgatttctcttttattgtgtttgaagttaatggtttcatttattttctataaaactcttcccatccttacaatagt |
29603470 |
T |
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| Q |
504 |
tgatttgcaattagagttgtcagaaagcaaaaatctgcctgcctcatatgttccttagttttttcccgttagtgttgtgttcgatgttcgtgtctatgtc |
603 |
Q |
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| T |
29603469 |
tgatttgcaattagagttgtcagaaagcaaaaatctgcctgcctcatatgttccttagttttttcccgttagtgttgtgttcgatgttcgtgtctatgtc |
29603370 |
T |
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| Q |
604 |
attgcttcatagttcactagtctctg |
629 |
Q |
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| T |
29603369 |
attgcttcatagttcactagtctctg |
29603344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 29605262 - 29605217
Alignment:
| Q |
25 |
ttgcttcacaagtaactctaactgtaaccgattactaactcacact |
70 |
Q |
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| T |
29605262 |
ttgcttcacaagtaactctaaccgtaaccgattactaactcacact |
29605217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 29602539 - 29602626
Alignment:
| Q |
113 |
tcaagtgccgctgatatgatctcaattgtggtcatgttgcagtctca--gacacgaaattccttcattttgcaacctaaactgtggtt |
198 |
Q |
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| T |
29602539 |
tcaaatgccgctcatatgatctcacttgtggtcatgttgcagtcgcagcgacatgaaattccttgattttggaacctaagttgtggtt |
29602626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 615
Target Start/End: Complemental strand, 8921118 - 8921077
Alignment:
| Q |
574 |
agtgttgtgttcgatgttcgtgtctatgtcattgcttcatag |
615 |
Q |
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| T |
8921118 |
agtgttgtgtttaatgttcgtgtctatgtcattgtttcatag |
8921077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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