View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2115_low_3 (Length: 545)
Name: NF2115_low_3
Description: NF2115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2115_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Complemental strand, 44142271 - 44141757
Alignment:
| Q |
18 |
atcttttatgatttccagctggattccggacttttatgttttctgcagcttctgtccgaggagcaaaacatgggttttccttcacattcaataggtatac |
117 |
Q |
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| T |
44142271 |
atcttttatgatttccagctggattccggacttttatgttttctgcagcttcagtccgaggagcaaaacatgggttttccttcacattcaataggtatac |
44142172 |
T |
|
| Q |
118 |
tttcctcacttgagaaaaaacatttcttttctctatttgtatttgttcagtaattgagtggaaatgggcgaaagcatggtttgttttcatgagtttattt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142171 |
tttcctcacttgagaaaaaacatttcttttctctatttgtatttgttcaataattgagtggaaatgggcgaaagcatggtttgttttcatgagtttattt |
44142072 |
T |
|
| Q |
218 |
gggctatatatctttagggccactactgattcggattcatatcttctcaacttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgca |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142071 |
gggctatatatctttagggctactactgattcggattcatatcttctcaacttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgca |
44141972 |
T |
|
| Q |
318 |
gatcgcattttctc----aacaaaacnnnnnnnncattaatggttgtataagatataacctcaggctcctttgatagtggtcctgactcctgaatacaat |
413 |
Q |
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|||| ||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44141971 |
gatcacattttctcaaaaaaaaaaaaaaaaaaaacattaatggttgtataagatataacctcaggctcctttgatagtggtcctgactcctgaatacaat |
44141872 |
T |
|
| Q |
414 |
ttatattctcgcaatgcagatatagtttattcttgctatgcttagttgaagatgttccgaccgttgcatcatcccccagcatagcttctcgatcttttac |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44141871 |
ttatattctcgcaatgcagatatagtttattcttgctatgcttagttgaagatgttccgaccgttgcatcatcccccagcatagcttctcgatcttttac |
44141772 |
T |
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| Q |
514 |
tccatacaagtccat |
528 |
Q |
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| T |
44141771 |
tccatacaagtccat |
44141757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 169 - 528
Target Start/End: Complemental strand, 50062698 - 50062334
Alignment:
| Q |
169 |
aattgagtggaaatgggcgaaagcatggtttgttttcatgagtttatttgggctatatatctttagggccactactgattcggattcatatcttctcaac |
268 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50062698 |
aattgagcggaaatgggcgaaagcatattttgttttcatgagtttatttgggctatatatctttagggctactactgattcggattcatatcttctcaac |
50062599 |
T |
|
| Q |
269 |
ttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgcagatcgcattttctcaacaaaacnnnnnnnnca-----ttaatggttgtata |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||| |
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| T |
50062598 |
ttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgtagatcgcattttctcaaaaaaaaaaaaaaaaaaaaaccttaatggttgtata |
50062499 |
T |
|
| Q |
364 |
agatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatattctcgcaatgcagatatagtttattcttgctatgcttagttgaa |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
50062498 |
agatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatattctcacaatgcagatatagtttattctggctatgcttagttgaa |
50062399 |
T |
|
| Q |
464 |
gatgttccgaccgttgcatcatcccccagcatagcttctcgatcttttactccatacaagtccat |
528 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
50062398 |
gatgttccgaccgttgcatcatcccccagcatagcatctcgatcttttactcaatacaagtccat |
50062334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 50062923 - 50062794
Alignment:
| Q |
18 |
atcttttatgatttccagctggattccggacttttatgttttctgcagcttctgtccgaggagcaaaacatgggttttccttcacattcaataggtatac |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50062923 |
atcttttatgatttccagctggattgcggacttttatgttttctgcagcttcagtccgaggagcaaaacatgggttttccttcacattcaataggtatac |
50062824 |
T |
|
| Q |
118 |
tttcctcacttgagaaaaaacatttctttt |
147 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
50062823 |
tttcctcacttgagaaaaaacatttctttt |
50062794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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