View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21160_high_1 (Length: 754)

Name: NF21160_high_1
Description: NF21160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21160_high_1
NF21160_high_1
[»] chr6 (1 HSPs)
chr6 (39-735)||(6551742-6552452)


Alignment Details
Target: chr6 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 39 - 735
Target Start/End: Complemental strand, 6552452 - 6551742
Alignment:
Q  39 acccctagagtaaaaaacaacctgagaacatggagaatccataaaacaaatggtagcataaagaaagnnnnnnnn-tgtagtatttggaataaagaatga 137  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||| ||    
T  6552452 acccctagagtaaaaaacaacccgagaacatggagaatccataaaacaaatggtagcataaagaaagaaaaaaaaatgtagtatttggaataaagaacga 6552353  T
Q  138 tacctatacatgagtatgaaatcgagacgtcgtgggttggaagggaaaagtaatcaaccatcataaaattttcgaccaagaatt-----ttacgaaatta 232  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||      | |||||||||    
T  6552352 tacctatacataagtatgaaatcgagacgtcgtgggttggaaggaaaaagtaaccaaccatcataaaattttcgaccaacaataaactctcacgaaatta 6552253  T
Q  233 ccggaaagtctcacaagaaaacttgaaagaagaggagttttgaagagtttaaaatattaaaagcaagttttttccacctatttatagaaaaccaaaatct 332  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6552252 tcggaaagtctcacaagaaaacttgaaagaagaggagttttgaagagtttaaaatattaaaagcaagttttttccacctatttatagaaaaccaaaatct 6552153  T
Q  333 atatttataccatcacgttagaaaattcctcaacagactcaacaaggtttttcgtccaatttcc------------ataaataaacatttgcatgaggag 420  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||    
T  6552152 atatttataccatcacgttggaaaattcctcaacagactcaacaaggtttttcgtccaatttccgtaaaactttctataaataaacatttgcatgaggag 6552053  T
Q  421 aaagttacacacactatattctaaaaaacctttcaactatctcattcatgaattgaccaaagctttggagtattatctacccaccgaattctaaaaaacc 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | | | ||  ||||||||||||||    
T  6552052 aaagttacacacactatattctaaaaaacctttcaactatctcattcatgaattgaccaaagctttggagtatttgcaaac-actaaattctaaaaaacc 6551954  T
Q  521 tttcaannnnnnnc-tttcttcatccctataaaattctggatatgccactagcaaccaccacaacaaaccgagaaacatcaacttcatataataaaacta 619  Q
    ||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6551953 tttcaattttttttatttcttcatccctataaaattctggatatgccactagcaaccaccacaacaaaccgtgaaacatcaacttcatataataaaacta 6551854  T
Q  620 aacgaataatagcctcaaaatcagacataagtgattgatctttatgccaaaggagtaatttatctatatgatagatatatcgatggaatagcaccacaca 719  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  6551853 aacgaataatagcctcaaaatcagacataagtgattgattcttatgccaaaggagtaatttatctatat----gatatatcgatggaatagcaccacaca 6551758  T
Q  720 cactaatgatgatgtc 735  Q
    ||||||| ||||||||    
T  6551757 cactaattatgatgtc 6551742  T

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