View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21160_high_3 (Length: 438)

Name: NF21160_high_3
Description: NF21160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21160_high_3
NF21160_high_3
[»] chr6 (6 HSPs)
chr6 (398-438)||(2996224-2996264)
chr6 (221-256)||(16193825-16193860)
chr6 (213-262)||(2996055-2996104)
chr6 (220-256)||(15057111-15057147)
chr6 (228-256)||(28606479-28606507)
chr6 (220-256)||(28606567-28606603)
[»] chr8 (4 HSPs)
chr8 (221-256)||(31470840-31470875)
chr8 (220-256)||(3647481-3647517)
chr8 (221-256)||(7931551-7931586)
chr8 (213-256)||(32857068-32857111)
[»] chr4 (8 HSPs)
chr4 (221-256)||(11392394-11392429)
chr4 (221-262)||(30023635-30023676)
chr4 (219-262)||(337030-337073)
chr4 (223-261)||(22435442-22435480)
chr4 (220-262)||(35297495-35297537)
chr4 (213-251)||(43063537-43063575)
chr4 (227-256)||(29821361-29821390)
chr4 (221-262)||(46321425-46321466)
[»] chr3 (6 HSPs)
chr3 (221-256)||(53299824-53299859)
chr3 (220-253)||(26960937-26960970)
chr3 (220-256)||(26960839-26960875)
chr3 (221-261)||(29081690-29081730)
chr3 (221-262)||(48342306-48342347)
chr3 (222-255)||(53299734-53299767)
[»] chr2 (6 HSPs)
chr2 (220-254)||(18182528-18182562)
chr2 (223-256)||(1355989-1356022)
chr2 (221-261)||(5095804-5095844)
chr2 (221-251)||(7755363-7755393)
chr2 (213-247)||(12918552-12918586)
chr2 (213-247)||(39819082-39819116)
[»] chr7 (5 HSPs)
chr7 (221-262)||(32315734-32315775)
chr7 (225-256)||(6980892-6980923)
chr7 (220-256)||(16648911-16648947)
chr7 (220-256)||(17623272-17623308)
chr7 (220-252)||(27385931-27385963)
[»] chr5 (5 HSPs)
chr5 (220-256)||(34394691-34394727)
chr5 (215-261)||(4376371-4376417)
chr5 (213-247)||(29385390-29385424)
chr5 (220-256)||(5998555-5998591)
chr5 (220-252)||(20986462-20986494)
[»] chr1 (6 HSPs)
chr1 (221-256)||(10449475-10449510)
chr1 (221-256)||(44291144-44291179)
chr1 (221-251)||(4579195-4579225)
chr1 (219-253)||(44382433-44382467)
chr1 (222-262)||(44801780-44801821)
chr1 (213-253)||(421227-421267)
[»] scaffold0343 (1 HSPs)
scaffold0343 (219-252)||(12307-12340)
[»] scaffold0312 (1 HSPs)
scaffold0312 (213-253)||(9304-9344)
[»] scaffold0031 (1 HSPs)
scaffold0031 (220-256)||(105402-105438)


Alignment Details
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 438
Target Start/End: Original strand, 2996224 - 2996264
Alignment:
Q  398 acaatagcacattggagcaatcaatacaagatagtggcaag 438  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  2996224 acaatagcacattggagcaatcaatacaagctagtggcaag 2996264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 16193860 - 16193825
Alignment:
Q  221 gtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    |||||||||| |||||||||||||||||||||||||    
T  16193860 gtgacattggtcaaccacaatgtcacaagtgtacaa 16193825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 2996055 - 2996104
Alignment:
Q  213 tgacatttgtgacattggccaaccacaatgtcacaagtgtacaataaaac 262  Q
    ||||||||||||||||||  |||| |||| |||||||||||||| |||||    
T  2996055 tgacatttgtgacattggttaaccccaatatcacaagtgtacaacaaaac 2996104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 15057147 - 15057111
Alignment:
Q  220 tgtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  15057147 tgtgacattggccaaccaaaatatcacaagtgtacaa 15057111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 28606479 - 28606507
Alignment:
Q  228 tggccaaccacaatgtcacaagtgtacaa 256  Q
    |||||||||||||||||||||||||||||    
T  28606479 tggccaaccacaatgtcacaagtgtacaa 28606507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 28606603 - 28606567
Alignment:
Q  220 tgtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    |||||||||||||||||||||||||  ||||||||||    
T  28606603 tgtgacattggccaaccacaatgtcttaagtgtacaa 28606567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 31470875 - 31470840
Alignment:
Q  221 gtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    ||||||||||||||||||||||||||||||||||||    
T  31470875 gtgacattggccaaccacaatgtcacaagtgtacaa 31470840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 3647517 - 3647481
Alignment:
Q  220 tgtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    ||||||||||||||||||||||| |||||||||||||    
T  3647517 tgtgacattggccaaccacaatgacacaagtgtacaa 3647481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 7931551 - 7931586
Alignment:
Q  221 gtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    ||||||||| ||||||||||||||||||||||||||    
T  7931551 gtgacattgaccaaccacaatgtcacaagtgtacaa 7931586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 32857111 - 32857068
Alignment:
Q  213 tgacatttgtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    |||||||  |||||| ||||||||||||||||||||||||||||    
T  32857111 tgacattgatgacataggccaaccacaatgtcacaagtgtacaa 32857068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 11392429 - 11392394
Alignment:
Q  221 gtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    ||||||||||||||||||||||||||||||||||||    
T  11392429 gtgacattggccaaccacaatgtcacaagtgtacaa 11392394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 30023676 - 30023635
Alignment:
Q  221 gtgacattggccaaccacaatgtcacaagtgtacaataaaac 262  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  30023676 gtgacattgaccaaccacaatgtcacaagtgtacaaaaaaac 30023635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 337073 - 337030
Alignment:
Q  219 ttgtgacattggccaaccacaatgtcacaagtgtacaataaaac 262  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||    
T  337073 ttgtgacattgaccaaccacaatgtcaaaagtgtacaaaaaaac 337030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 22435480 - 22435442
Alignment:
Q  223 gacattggccaaccacaatgtcacaagtgtacaataaaa 261  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  22435480 gacattgaccaaccacaatgtcacaagtgtacaaaaaaa 22435442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 35297495 - 35297537
Alignment:
Q  220 tgtgacattggccaaccacaatgtcacaagtgtacaataaaac 262  Q
    |||||||||| ||||||||||| |||||||||||||| |||||    
T  35297495 tgtgacattgaccaaccacaatatcacaagtgtacaaaaaaac 35297537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 43063537 - 43063575
Alignment:
Q  213 tgacatttgtgacattggccaaccacaatgtcacaagtg 251  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  43063537 tgacattggtgacattagccaaccacaatgtcacaagtg 43063575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 256
Target Start/End: Original strand, 29821361 - 29821390
Alignment:
Q  227 ttggccaaccacaatgtcacaagtgtacaa 256  Q
    ||||||||||||||||||||||||||||||    
T  29821361 ttggccaaccacaatgtcacaagtgtacaa 29821390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 46321466 - 46321425
Alignment:
Q  221 gtgacattggccaaccacaatgtcacaagtgtacaataaaac 262  Q
    ||||||||| |||||||||||||||||| ||||||| |||||    
T  46321466 gtgacattgaccaaccacaatgtcacaactgtacaaaaaaac 46321425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 53299859 - 53299824
Alignment:
Q  221 gtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    ||||||||||||||||||||||||||||||||||||    
T  53299859 gtgacattggccaaccacaatgtcacaagtgtacaa 53299824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 26960970 - 26960937
Alignment:
Q  220 tgtgacattggccaaccacaatgtcacaagtgta 253  Q
    ||||||||||||||||||||||||||||||||||    
T  26960970 tgtgacattggccaaccacaatgtcacaagtgta 26960937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 26960839 - 26960875
Alignment:
Q  220 tgtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    ||||||||| |||||||||||||||||||||||||||    
T  26960839 tgtgacattagccaaccacaatgtcacaagtgtacaa 26960875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 29081730 - 29081690
Alignment:
Q  221 gtgacattggccaaccacaatgtcacaagtgtacaataaaa 261  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  29081730 gtgacattggtcaaccacaatgtcacaagtgtacaaaaaaa 29081690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 48342347 - 48342306
Alignment:
Q  221 gtgacattggccaaccacaatgtcacaagtgtacaataaaac 262  Q
    |||| ||||||||||||||||||||||| ||||||| |||||    
T  48342347 gtgatattggccaaccacaatgtcacaaatgtacaaaaaaac 48342306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 53299734 - 53299767
Alignment:
Q  222 tgacattggccaaccacaatgtcacaagtgtaca 255  Q
    |||||||||||||||||||||||||| |||||||    
T  53299734 tgacattggccaaccacaatgtcacaggtgtaca 53299767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 18182528 - 18182562
Alignment:
Q  220 tgtgacattggccaaccacaatgtcacaagtgtac 254  Q
    |||||||||||||||||||||||||||||||||||    
T  18182528 tgtgacattggccaaccacaatgtcacaagtgtac 18182562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 1356022 - 1355989
Alignment:
Q  223 gacattggccaaccacaatgtcacaagtgtacaa 256  Q
    ||||||||||||||||||||||||||||||||||    
T  1356022 gacattggccaaccacaatgtcacaagtgtacaa 1355989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 5095844 - 5095804
Alignment:
Q  221 gtgacattggccaaccacaatgtcacaagtgtacaataaaa 261  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  5095844 gtgacattggccaaccacaatgtcacaaatgtacaaaaaaa 5095804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 251
Target Start/End: Original strand, 7755363 - 7755393
Alignment:
Q  221 gtgacattggccaaccacaatgtcacaagtg 251  Q
    |||||||||||||||||||||||||||||||    
T  7755363 gtgacattggccaaccacaatgtcacaagtg 7755393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 12918552 - 12918586
Alignment:
Q  213 tgacatttgtgacattggccaaccacaatgtcaca 247  Q
    ||||||| |||||||||||||||||||||||||||    
T  12918552 tgacattggtgacattggccaaccacaatgtcaca 12918586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 39819082 - 39819116
Alignment:
Q  213 tgacatttgtgacattggccaaccacaatgtcaca 247  Q
    ||||||| |||||||||||||||||||||||||||    
T  39819082 tgacattggtgacattggccaaccacaatgtcaca 39819116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 32315734 - 32315775
Alignment:
Q  221 gtgacattggccaaccacaatgtcacaagtgtacaataaaac 262  Q
    |||||||||||||||||||||||||||| ||||||| |||||    
T  32315734 gtgacattggccaaccacaatgtcacaattgtacaaaaaaac 32315775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 256
Target Start/End: Original strand, 6980892 - 6980923
Alignment:
Q  225 cattggccaaccacaatgtcacaagtgtacaa 256  Q
    ||||||||||||||||||||||||||||||||    
T  6980892 cattggccaaccacaatgtcacaagtgtacaa 6980923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 16648947 - 16648911
Alignment:
Q  220 tgtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  16648947 tgtgacattggcaaaccacaatttcacaagtgtacaa 16648911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 17623308 - 17623272
Alignment:
Q  220 tgtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  17623308 tgtgacattggcaaaccacaatatcacaagtgtacaa 17623272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 27385963 - 27385931
Alignment:
Q  220 tgtgacattggccaaccacaatgtcacaagtgt 252  Q
    |||||| ||||||||||||||||||||||||||    
T  27385963 tgtgacgttggccaaccacaatgtcacaagtgt 27385931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 34394691 - 34394727
Alignment:
Q  220 tgtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    ||||||||||| |||||||||||||||||||||||||    
T  34394691 tgtgacattggtcaaccacaatgtcacaagtgtacaa 34394727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 4376371 - 4376417
Alignment:
Q  215 acatttgtgacattggccaaccacaatgtcacaagtgtacaataaaa 261  Q
    ||||| ||| |||||| ||||||||||||||||||||||||| ||||    
T  4376371 acattcgtgccattggtcaaccacaatgtcacaagtgtacaaaaaaa 4376417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 29385424 - 29385390
Alignment:
Q  213 tgacatttgtgacattggccaaccacaatgtcaca 247  Q
    ||||||| |||||||||||||||||||||||||||    
T  29385424 tgacattggtgacattggccaaccacaatgtcaca 29385390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 5998555 - 5998591
Alignment:
Q  220 tgtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  5998555 tgtgacattggtcaaccacaatgtcagaagtgtacaa 5998591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 20986462 - 20986494
Alignment:
Q  220 tgtgacattggccaaccacaatgtcacaagtgt 252  Q
    ||||||||||| |||||||||||||||||||||    
T  20986462 tgtgacattggtcaaccacaatgtcacaagtgt 20986494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 10449475 - 10449510
Alignment:
Q  221 gtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    ||||||||| ||||||||||||||||||||||||||    
T  10449475 gtgacattgaccaaccacaatgtcacaagtgtacaa 10449510  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 44291179 - 44291144
Alignment:
Q  221 gtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    |||||||||| |||||||||||||||||||||||||    
T  44291179 gtgacattggtcaaccacaatgtcacaagtgtacaa 44291144  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 251
Target Start/End: Original strand, 4579195 - 4579225
Alignment:
Q  221 gtgacattggccaaccacaatgtcacaagtg 251  Q
    |||||||||||||||||||||||||||||||    
T  4579195 gtgacattggccaaccacaatgtcacaagtg 4579225  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 253
Target Start/End: Complemental strand, 44382467 - 44382433
Alignment:
Q  219 ttgtgacattggccaaccacaatgtcacaagtgta 253  Q
    ||||||||||||||||||||||| |||||||||||    
T  44382467 ttgtgacattggccaaccacaatatcacaagtgta 44382433  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 44801780 - 44801821
Alignment:
Q  222 tgacattggccaaccacaatgtcac-aagtgtacaataaaac 262  Q
    ||||||||||||||||||||||||| |||||||||| |||||    
T  44801780 tgacattggccaaccacaatgtcacaaagtgtacaaaaaaac 44801821  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 421267 - 421227
Alignment:
Q  213 tgacatttgtgacattggccaaccacaatgtcacaagtgta 253  Q
    ||||||| | ||||||||||||||||||||||| |||||||    
T  421267 tgacattggcgacattggccaaccacaatgtcataagtgta 421227  T

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Target: scaffold0343 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 12340 - 12307
Alignment:
Q  219 ttgtgacattggccaaccacaatgtcacaagtgt 252  Q
    ||||||||||| ||||||||||||||||||||||    
T  12340 ttgtgacattgaccaaccacaatgtcacaagtgt 12307  T

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Target: scaffold0312 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 9304 - 9344
Alignment:
Q  213 tgacatttgtgacattggccaaccacaatgtcacaagtgta 253  Q
    ||||||| | ||||||||||||||||||||||| |||||||    
T  9304 tgacattggcgacattggccaaccacaatgtcataagtgta 9344  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 105402 - 105438
Alignment:
Q  220 tgtgacattggccaaccacaatgtcacaagtgtacaa 256  Q
    |||||||||| |||| |||||||||||||||||||||    
T  105402 tgtgacattgaccaatcacaatgtcacaagtgtacaa 105438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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