View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21160_high_6 (Length: 343)
Name: NF21160_high_6
Description: NF21160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21160_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 30 - 330
Target Start/End: Complemental strand, 44085019 - 44084716
Alignment:
| Q |
30 |
aatacttaattggttcttctatttgtttgatcatgcaagttatataaagtttgtttggcaagtttataaaagaattttaactttttgttgaaatttttaa |
129 |
Q |
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| T |
44085019 |
aatacttaattggttcttctatttgtttgattatgcaagttatataatatttgtttggaaagtttataaaagaattttaacattttgttgaaatttttaa |
44084920 |
T |
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| Q |
130 |
ggctgagaattgagtggtaattataataacctac--ttac-atgccagactcatttctgtttctttttccctccaccggatataatctagtcgagacaat |
226 |
Q |
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| T |
44084919 |
ggctgagaattgagtggtaattattataactttggtttattattccctactcatttctgtttctttttccctccaccggatataatctagtcgagacaat |
44084820 |
T |
|
| Q |
227 |
gtcatattggaaatgtggacacttcttccgattaaaatttgaattttaattgtcgtattgtcataatctaattctttggcacctctttcatcttattatt |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44084819 |
gtcatattggaaatgtggacacttcttccgattaaaattttaattttaattgtcgtattgtcataatctaattctttggcacctctttcatcttattatt |
44084720 |
T |
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| Q |
327 |
cttc |
330 |
Q |
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|||| |
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| T |
44084719 |
cttc |
44084716 |
T |
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