View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21160_high_7 (Length: 342)
Name: NF21160_high_7
Description: NF21160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21160_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 162 - 330
Target Start/End: Complemental strand, 40298031 - 40297862
Alignment:
| Q |
162 |
ccagacattccaaaaccactcttaacatgcacttatacaagttaacacaaacctagctaataaaattaatgaaatcaacttttttgtct-nnnnnnnnct |
260 |
Q |
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| T |
40298031 |
ccagacattccaaaaccactcttaacatgcccttatacaagttaacacaaacctagctaataaaattaatgaaatcaacttttttgtctaaaaaaaaact |
40297932 |
T |
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| Q |
261 |
aaaatcaactttgtaattgtagtagccaataatggttcaaatcaaagtctcgtggatttagttggagtat |
330 |
Q |
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| T |
40297931 |
aaaatcaactttgtaattgtagtagccaataatggttcaaaccaaagtctcgtggatttagttggagtat |
40297862 |
T |
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Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 40298164 - 40298089
Alignment:
| Q |
27 |
tcaaatggcccttcaacgtcccataacttgatatagaataataaatattcctccttaacaatgatacaaggaagag |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40298164 |
tcaaatggcccttcaacgtcccataacttgatatagaataataaatattcctccttaacaatgatacaaggaagag |
40298089 |
T |
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