View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21161_high_3 (Length: 405)
Name: NF21161_high_3
Description: NF21161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21161_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 72 - 348
Target Start/End: Original strand, 34816033 - 34816309
Alignment:
| Q |
72 |
catacttcttacttctcatcaaccattgcacttgaagcaaattgtagacaaataaaattggaaagaataattataaaatgagagctaaaataaagttgca |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34816033 |
catacttcttacttctcatcaaccattgcacttgaagcaaattgtagaaaaataaaattggaaagaataattataaaatgagagctaaaataaagttgca |
34816132 |
T |
|
| Q |
172 |
tgcaacaaaaacggaaatgcaggaaagatagaaagaacttacatagcaaaaaagttaaaacatagagccaaacacagcttatgcaattccaactaagcaa |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
34816133 |
tgcaacaaaaacggaaatgcaggaaagatagaaagaacttacatagcaaaaaagttaaaacatagaaccaaaaacagcttatgcaattccaactaagcaa |
34816232 |
T |
|
| Q |
272 |
gattatttgtgtacaaaatgataaagagnnnnnnncaggattgaagttgaagaatgacaacaagaatagtacataat |
348 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34816233 |
gattatttgtgtacaaaatgataaagagaaaaaaacaggattgaagttgaagaatgacaacaagaatagtacataat |
34816309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University