View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21161_high_6 (Length: 370)
Name: NF21161_high_6
Description: NF21161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21161_high_6 |
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| [»] scaffold0693 (2 HSPs) |
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Alignment Details
Target: scaffold0693 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: scaffold0693
Description:
Target: scaffold0693; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 4142 - 3931
Alignment:
| Q |
10 |
gcacagatgtaaattctaaggagaggagcagttctcttgtttttattcaacagaggaaacaaaacttgcatt---------gaatgttcaaataatactt |
100 |
Q |
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| T |
4142 |
gcacagatgttaactctaaggagaggagcagttctcttgtttttattcaacagaggaaacaaaacttgcattaattaaattgaatattcaaataatactt |
4043 |
T |
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| Q |
101 |
ttgtacaaattnnnnnnnnnnnnnnggaggagaagagacaaattcaaacaatattaggaaccgacaataaatgcaaccagctatgtgtacctatccctct |
200 |
Q |
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| T |
4042 |
ttgtacaaattaaaaaaataaaaaaggaggagaagagacaaattcaaacaatattaggaaccgacaataaatgcaactagctatgtgtacctatccctct |
3943 |
T |
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| Q |
201 |
tgcttgcacacg |
212 |
Q |
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|||||||||||| |
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| T |
3942 |
tgcttgcacacg |
3931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0693; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 251 - 351
Target Start/End: Complemental strand, 3829 - 3729
Alignment:
| Q |
251 |
ccttcaaacgcaggaacctctttggagagtacattcttaatactttgtaagctgagatagttgatatcatagccattaaaatggatgctatatagcagca |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3829 |
ccttcaaacgcaggaacctctttggagagtacattcttaatactttgtaagctgagatagttgatatcatagccattaaaatggatgctatatagcagca |
3730 |
T |
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| Q |
351 |
t |
351 |
Q |
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| T |
3729 |
t |
3729 |
T |
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