View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21161_low_1 (Length: 546)
Name: NF21161_low_1
Description: NF21161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21161_low_1 |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 82 - 529
Target Start/End: Complemental strand, 36291348 - 36290925
Alignment:
| Q |
82 |
tacaaccatacatatttttaccggagaaaactaattcatatcattaataataaaaggattgatagaaaatattaaaataaagttgagaacagatgttgta |
181 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36291348 |
tacaaccatacatatttttactggagaaaactaattcatatcattaataataaaaggattgatagaaaatattaaaataaagttg-------------ta |
36291262 |
T |
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| Q |
182 |
tataactcatcttaataaagctgggagaaaccatattagtatgtctcttagaaaatttcagataaaaattgttatataacgatgataaagtattatgaca |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36291261 |
tataactcatcttaataaagctgggagaaaccatattagtatgtctcttagaaaatttcagataaaaattgttatataacgatgataaagtattatgaca |
36291162 |
T |
|
| Q |
282 |
taaaaaggaaattgaattggttctatcattgaccgacaagttaaatactccatgacactttttaaatttaaaataaagataacttgcttgaacttttatt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36291161 |
taaaaaggaaattgaattggttctatcattgaccgacaagttaaatactccacaacactttttaaatttaaaataaagataacttgcttgaacttttatt |
36291062 |
T |
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| Q |
382 |
ctcacatccactccatagttgctaataagcatgaatcctcactctccttaacatgcaaaataagttgcaaacacaaggaatatctattaaaaaataacaa |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36291061 |
ctcacatccactccatagttgctaataagcatgaatcc-----------cacatgcaaaataagttgcaaacacaaggaatatctattaaaaaataacaa |
36290973 |
T |
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| Q |
482 |
aatatccagtagaattattttctacggaaaattgtagtaggggaaaaa |
529 |
Q |
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| T |
36290972 |
aatatttagtagaattattttctacggaaaattgtagtagggaaaaaa |
36290925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 36293896 - 36293830
Alignment:
| Q |
13 |
aatataaggggataacttataaaggatgactagagattaatagagtagcagcatgactccaattaca |
79 |
Q |
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| T |
36293896 |
aatatgagggaataacttataaaggatgactaaagattgatagagtagcagcatgactccaattaca |
36293830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 451
Target Start/End: Complemental strand, 2442061 - 2441963
Alignment:
| Q |
353 |
aataaagataacttgcttgaacttttattctcacatccactccatagttgctaataagcatgaatcctcactctccttaacatgcaaaataagttgcaa |
451 |
Q |
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||||||||||||||||||||||| | ||| | || |||||| ||| |||||||||||||||| ||| | ||||||||||| ||| ||| ||||||| |
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| T |
2442061 |
aataaagataacttgcttgaactctaatttttgcacccactcgataattgctaataagcatgacgccttagcctccttaacattcaacataggttgcaa |
2441963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 443
Target Start/End: Original strand, 3539 - 3627
Alignment:
| Q |
355 |
taaagataacttgcttgaacttttattctcacatccactccatagttgctaataagcatgaatcctcactctccttaacatgcaaaata |
443 |
Q |
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|||||||| ||||||||||| |||||||| |||||||| || | |||||||||| ||| |||||| ||| ||||||| ||||||| |
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| T |
3539 |
taaagatagtttgcttgaactcttattctcgcatccacttgattgctgctaataagtcggaagcctcaccctcattaacattcaaaata |
3627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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