View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21161_low_4 (Length: 397)
Name: NF21161_low_4
Description: NF21161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21161_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 5643973 - 5644336
Alignment:
| Q |
16 |
atcaataatacaatattttcagcatgaaatcaaataaatgaatccaaaaacacaaacttttcaacatgaaatggaatcaaataaatgaacactaaaacac |
115 |
Q |
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| T |
5643973 |
atcaataatacaatattttcagcatgaaatcaaataaatgaatccaaaaacacaaacttttcaacatgaaatggtatcaaataaatgaacactaaaacac |
5644072 |
T |
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| Q |
116 |
aaattttcaaaatgaaatcatacacaatgaaaacataattttcaaactgaaatcaaactaataaaccttggaacacaatattcaacatgaaatcaattaa |
215 |
Q |
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| T |
5644073 |
aaatttttaaaatgaaatcatacacaatgaaaacataattttcaaactgaaatcaaactaataaaccttggaacacaatattcaacatgaaatcaattaa |
5644172 |
T |
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| Q |
216 |
aataaaaacataattatcaacatcaaatcaaagatacaaacccctaaaacacaattttcaacgtaaagtcaaataaaataaacttgaaaacataatttta |
315 |
Q |
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| T |
5644173 |
aataaaaacataattatcaacatcaaatcaaagatacaaacccctaaaacacaattttcaacgtaaaatcaaataaaataaactttaaaacacaatttta |
5644272 |
T |
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| Q |
316 |
tcaacaataaatgtgataaaaataggaaccttaacataagcattatcattcagcttatatataa |
379 |
Q |
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| T |
5644273 |
tcaacaataaatgtgataaaaataggaaccttaacataagcattatcattcagcttatatataa |
5644336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 379
Target Start/End: Original strand, 35535369 - 35535444
Alignment:
| Q |
304 |
aacataattttatcaacaataaatgtgataaaaataggaaccttaacataagcattatcattcagcttatatataa |
379 |
Q |
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| T |
35535369 |
aacacaattttatcaacattaaatgatataaaaatagaaaccttgacataagcattattatccagattatatataa |
35535444 |
T |
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