View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21161_low_8 (Length: 250)
Name: NF21161_low_8
Description: NF21161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21161_low_8 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 37646812 - 37647049
Alignment:
| Q |
13 |
aatatgagaagctatgtggtaatctgtaacatcgtctgggtcatcaatcataatgtatacaagatcaaaccttgaaagtatagctggtggaagagccaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37646812 |
aatatgagaagctatgtggtaatctgtaacatcgtctgggtcatcaatcataatgtatacaagatcaaaccttgaaagtatagccggtggaagagccaca |
37646911 |
T |
|
| Q |
113 |
ttgtactgaaacaaagaaagggcaaaaactaaattaggccaagttaaactcaataaggcaattaataaccaggttagcagaacatgttattaccttcagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37646912 |
ttgtactgaaacaaagaaagggcaaaaactaaattaggccaagttaaactcaataaggcaattaataaccaggttagcagaacatgttattaccttcagt |
37647011 |
T |
|
| Q |
213 |
ggtttagacttatcgtaccgtcctccagcagggttggc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37647012 |
ggtttagacttatcgtaccgtcctccagcagggttggc |
37647049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 157
Target Start/End: Original strand, 14759986 - 14760093
Alignment:
| Q |
50 |
gggtcatcaatcataatgtatacaagatcaaaccttgaaagtatagctggtggaagagccacattgtactgaaacaaagaaagggcaaaaactaaattag |
149 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| |||| |
|
|
| T |
14759986 |
gggtcatcaaccataacatatacaagatcaaacctagaaagtatagctggtggaagagccacattgtactgaaatatggaaagggccaaaactaagttag |
14760085 |
T |
|
| Q |
150 |
gccaagtt |
157 |
Q |
| |
|
|||||||| |
|
|
| T |
14760086 |
gccaagtt |
14760093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University