View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21162_high_6 (Length: 447)
Name: NF21162_high_6
Description: NF21162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21162_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 11 - 429
Target Start/End: Complemental strand, 4184384 - 4183965
Alignment:
| Q |
11 |
cacagacacactatacatcaatgtgggtttgcccac-tattcctcaaattaaggaaaaagttcacaaacaaaccaattagtactagaaacagaaagtgga |
109 |
Q |
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| T |
4184384 |
cacagtcacactatacatcaatgtgggtttgcccacctattcctcaaattaaggaaaaagttcacaaacaaaccaattagtactagaaacagaaagtgga |
4184285 |
T |
|
| Q |
110 |
accaatttaacaaaaaagctcagggtgacaattattagagaggggacatgatttctccttcatgattttgacgggttaattattggtctatcaacatgct |
209 |
Q |
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| T |
4184284 |
accaatttaacaaaaaagctcagggtgacaattattagagaggggacatgatttctccttcatgattttgacgggttaattattggtctatcaacatgct |
4184185 |
T |
|
| Q |
210 |
tgtttgtgctggagaacattttatgactctcaacatgcttgtttgtgctagagaacattttttgacgtaaaagattggttaaacttttacggttcatgca |
309 |
Q |
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| T |
4184184 |
tgtttgtgctggaaaacattttatgactatcaacatgcttgtttgtgctagagaacattttttgacgtaaaagattggttaaacttttacggttcatgca |
4184085 |
T |
|
| Q |
310 |
actcatcacactttggcaccttccctcttcatgattnnnnnnnctgtagttgaaacgtgggttataaagtcattttgaagctttatttacannnnnnnaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4184084 |
actcatcacactttggcaccttccctcttcatgattaaaaaaactgtagttgaaacgtgggttataaagtcattttgaagctttatttacatttttttaa |
4183985 |
T |
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| Q |
410 |
tacccttgtgctataattgc |
429 |
Q |
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|||||||||||||||||||| |
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| T |
4183984 |
tacccttgtgctataattgc |
4183965 |
T |
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