View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21162_high_7 (Length: 377)

Name: NF21162_high_7
Description: NF21162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21162_high_7
NF21162_high_7
[»] chr5 (1 HSPs)
chr5 (94-377)||(35673270-35673553)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 94 - 377
Target Start/End: Original strand, 35673270 - 35673553
Alignment:
Q  94 tttcatcactcacaccagaaaaactcatctcctccatttctcaacttggttttattcaattcactgatcactcagtttcttcaaaactcgccaacttggc 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  35673270 tttcatcactcacaccagaaaaactcatctcctccatttctcaacttggttttattcaactcactgatcactcagtttcttcaaaacttgccaacttggc 35673369  T
Q  194 tgagtcagagtcactcaaactcttcaacctttcacatgatcaaaaagaatcattcttccctcaaaactggcctttcggttacgaaggtgacaacgacaac 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35673370 tgagtcagagtcactcaaactcttcaacctttcacatgatcaaaaagaatcattcttccctcaaaactggcctttcggttacgaaggtgacaacgacaac 35673469  T
Q  294 gacgaagaaaaactcgttgagtcgttccggttccagttcgactcgttgtgttcaaccgagtcgaaccagataaaactagaatca 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35673470 gacgaagaaaaactcgttgagtcgttccggttccagttcgactcgttgtgttcaaccgagtcgaaccagataaaactagaatca 35673553  T

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