View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21162_low_1 (Length: 621)
Name: NF21162_low_1
Description: NF21162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21162_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 543; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 4 - 605
Target Start/End: Complemental strand, 16281801 - 16281189
Alignment:
| Q |
4 |
atgaaaatctaacagtaacatacgaagatcaacacaaaatatacgcaaatatcaaaacgcatcaactcttcattggagaagcaaaacgtgaactcataaa |
103 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16281801 |
atgaaaatctaacagtaacatacgaaaatcaacacaaaatatacgcaaagatcaaaacgcatcaactcttcattggagaagcaaaacgtgaactcataaa |
16281702 |
T |
|
| Q |
104 |
ctaacctcgcaattttgaaattcggcaacgcaatcaaaaattgaaacacgtaaatcacatagaatctcaattttcaagtgaaatgaaaatgctaacctca |
203 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16281701 |
ctaacctcgcaattttgaaattcggcaacgcaatcaaaaattcaaacacgtaaatcacatagaatctcaattttcaagtgaaatgaaaatgctaacctca |
16281602 |
T |
|
| Q |
204 |
cctcaagtgaaaatcaacacaa-----------gaatctaaatacataaaatcttcatcagagaaggaaaacgtgaactgaaaatcgaaactaagctcac |
292 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16281601 |
cctcaagtgaaaatcaacacaaaatctacacaagaatctaaatacataaaatcttcatcagagaaggaaaacgtgaactgaaaatcgaaactaagctcac |
16281502 |
T |
|
| Q |
293 |
aattttcaaagccggcgacacagtcaaaaattcaaacacgtaaagcatatagaatcacaattttcagagtaaaatgaaatgctaacagtaaccaacgaaa |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16281501 |
aattttcaaagccggcgacacagtcaaaaattcaaacacgtaaagcacatagaatcacaattgtcagagtaaaatgaaatgctaacagtaaccaacgaaa |
16281402 |
T |
|
| Q |
393 |
atcaactaaaaaatctacacgaatatctaagcacattaactcttcacaaaacgtaaactaaaaaccgtaacgaacctcctcgcaatttcgaaattcggca |
492 |
Q |
| |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16281401 |
atcaactaaaaaatctaaacgaatatcaaagcacattaactcttcacaaaacgtaaactaaaaaccgtaacgaacctcctcgcaatttcgaaattcggca |
16281302 |
T |
|
| Q |
493 |
acggaggaatcacgatctggattcaaaaccgttagatcgttctcttcgacgctgattcggtgagggagaaccgcggaaaggaaggaggagagagcggatt |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16281301 |
acggaggaatcacgatctggattcaaaaccgttagatcgttctcttcgacgctgatttggtgagggagaaccgcggaaaggaaggaggagagagcggatt |
16281202 |
T |
|
| Q |
593 |
cgatcgggaaagg |
605 |
Q |
| |
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||||||||||||| |
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| T |
16281201 |
cgatcgggaaagg |
16281189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 16282959 - 16282849
Alignment:
| Q |
288 |
ctcacaattttcaaagccggcgacacagtcaaaaattcaaacacgtaaagcatatagaatcacaattttcagagtaaaatgaaatgctaacagtaaccaa |
387 |
Q |
| |
|
||||||||||| ||| |||| ||||| ||||| ||||||| ||| |||| |||||||| |||||||||||||||||||||||| |||||| | || |
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| T |
16282959 |
ctcacaattttaaaattcggcaacacaatcaaatattcaaaaacgacgagcacatagaatctcaattttcagagtaaaatgaaatggcaacagtttctaa |
16282860 |
T |
|
| Q |
388 |
cgaaaatcaac |
398 |
Q |
| |
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| ||||||||| |
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|
| T |
16282859 |
caaaaatcaac |
16282849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 16282963 - 16282876
Alignment:
| Q |
105 |
taacctcgcaattttgaaattcggcaacgcaatcaaaaattgaaacacgtaaatcacatagaatctcaattttca-agtgaaatgaaa |
191 |
Q |
| |
|
||||||| ||||||| |||||||||||| |||||||| ||| ||| ||| | ||||||||||||||||||||| ||| |||||||| |
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| T |
16282963 |
taacctcacaattttaaaattcggcaacacaatcaaatattcaaaaacgacgagcacatagaatctcaattttcagagtaaaatgaaa |
16282876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 16282448 - 16282405
Alignment:
| Q |
341 |
atagaatcacaattttcagagtaaaatgaaatgctaacagtaac |
384 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||||||||||||| |
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|
| T |
16282448 |
atagaatctcaattttcagagtgaaatgtaatgctaacagtaac |
16282405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 16283861 - 16283802
Alignment:
| Q |
65 |
tcaactcttcattggagaagcaaaacgtgaactcataaactaacctcgcaattttgaaattc |
126 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||| |||||||||||| ||||||||| |||| |
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|
| T |
16283861 |
tcaattcttcattggagaatcaaaacatgaact--taaactaacctcacaattttgatattc |
16283802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 398
Target Start/End: Complemental strand, 16281826 - 16281769
Alignment:
| Q |
341 |
atagaatcacaattttcagagtaaaatgaaatgctaacagtaaccaacgaaaatcaac |
398 |
Q |
| |
|
|||||||| |||||||||||| |||||||| ||||||||||| |||||||||||| |
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|
| T |
16281826 |
atagaatctcaattttcagagcgaaatgaaaatctaacagtaacatacgaaaatcaac |
16281769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 16283266 - 16283213
Alignment:
| Q |
345 |
aatcacaattttcagagtaaaatgaaatgctaacagtaaccaacgaaaatcaac |
398 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| || | ||||||||||||| |
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|
| T |
16283266 |
aatctcaattttcagagcgaaatgaaatgctaacaataccgaacgaaaatcaac |
16283213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 336 - 368
Target Start/End: Complemental strand, 16282053 - 16282021
Alignment:
| Q |
336 |
agcatatagaatcacaattttcagagtaaaatg |
368 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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|
| T |
16282053 |
agcacatagaatcacaattttcagagtaaaatg |
16282021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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