View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21162_low_11 (Length: 288)
Name: NF21162_low_11
Description: NF21162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21162_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 46695870 - 46696156
Alignment:
| Q |
1 |
caagtaatccaagaggatgatgtcgctcacttgaatgacgacgtgcatgagaagaattcttaagagcttcttcatgtgaatatattttatttacattccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46695870 |
caagtaatccaagaggatgatgtcgctcacttgaatgacgacttgcatgagaagaattcttaagagcttcttcatgtgaatatattttatttacattccc |
46695969 |
T |
|
| Q |
101 |
agatgaaactttatgcattgatttgtccaaaaggttattcctagcaatgaataatagagttatcagaaacatcgatcaattatcgtaattcaaaatcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46695970 |
agatgaaactttatgcattgatttgtccaaaaggttattcctagcaatgaataatagagttatcagaaacatcgatcaattatcgtaattcaaaatcata |
46696069 |
T |
|
| Q |
201 |
aacaacataaactaggaaaaagattttacaagtacctcgtgtagtcctttaaatagatcgggtcaggtgaattcaaaagagaataat |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46696070 |
aacaacataaactaggaaaaagattttacaagtacctcgtgtagtcctttaaatagatcgggtcaggtgaattcaaaagagaataat |
46696156 |
T |
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