View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21162_low_15 (Length: 260)
Name: NF21162_low_15
Description: NF21162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21162_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 18236200 - 18236344
Alignment:
| Q |
1 |
aagaacaacacttaaacgaatttcaacaaacaagctaattcactactttcaattgcaacttccccgagaattatggtagagaaaagaaatatattatcgt |
100 |
Q |
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| T |
18236200 |
aagaacaacacttaaacgaatttcgacaaacaaattaattcactactttcaattgcaacttccctgagaattatggtagagaaaagaaatatattatcat |
18236299 |
T |
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| Q |
101 |
tactattttattaaaagttaattgtaactctaaccacgttgtgta |
145 |
Q |
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| T |
18236300 |
tactattttattaaaagttaattgtaactctaaccacgttgtgta |
18236344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 18236189 - 18235986
Alignment:
| Q |
3 |
gaacaacacttaaacgaatttcaacaaacaagctaattcactactttcaattgcaacttccccga-gaattatggtagagaaaagaaatatattatcgtt |
101 |
Q |
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| T |
18236189 |
gaacaacttttaaacgaatttcaacgaacaagttgattcaccacttttaattgcaactgctcctatgaattgtggcaaataagagaaatatattatcatt |
18236090 |
T |
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| Q |
102 |
actattttattaaaagttaattgtaactctaaccacgttgtgtattttcgctaattcatgtggaatcttaagttctaaacttttgcaggcttcgttactt |
201 |
Q |
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| T |
18236089 |
actatgt-attaaaaattaattataacgttaatcacgttgtgtattatctctaatgcacgttgaatcttaagttcttaacatttgcaagcttcgtcactt |
18235991 |
T |
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| Q |
202 |
ttcgc |
206 |
Q |
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| T |
18235990 |
ttcgc |
18235986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 18236344 - 18236418
Alignment:
| Q |
180 |
acttttgcaggcttcgttacttttcgcgcgtcgtttgtttgcactatatagcaatcttcaatgattatattcttc |
254 |
Q |
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| T |
18236344 |
acttttgcaagcttcattacttttcgcacgtcgtttgtttgcactatatagcaatcttcaatgattatattcttc |
18236418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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