View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21162_low_17 (Length: 251)

Name: NF21162_low_17
Description: NF21162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21162_low_17
NF21162_low_17
[»] chr4 (4 HSPs)
chr4 (21-237)||(24676095-24676309)
chr4 (21-235)||(14619175-14619389)
chr4 (29-230)||(9325893-9326092)
chr4 (29-230)||(9372615-9372814)
[»] chr1 (4 HSPs)
chr1 (21-237)||(30751925-30752139)
chr1 (21-237)||(30750114-30750328)
chr1 (21-200)||(30771565-30771742)
chr1 (183-237)||(4361195-4361249)
[»] scaffold0005 (1 HSPs)
scaffold0005 (21-235)||(197988-198202)
[»] chr5 (1 HSPs)
chr5 (32-120)||(292380-292468)
[»] chr6 (1 HSPs)
chr6 (150-237)||(12868843-12868930)
[»] chr2 (1 HSPs)
chr2 (47-121)||(2482596-2482670)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 24676309 - 24676095
Alignment:
Q  21 tatacttgttatttacttctttatcttaattttaatttgacacaaaatgacaaactttacctctcctagatatatcttatgagaaatcacaaaaatacct 120  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  24676309 tatacttattatttagttctttatcttaattttaatttgacacaaagtgacaaactttgcctcttctagatatatcttatgataaatcacaaaaatacct 24676210  T
Q  121 cgttgatgctgcttctccaaagtttactattgtcagtctcttgcctcaccaatgtcacgtaaaacggtggatcatgcatgctctttctttgataatatgg 220  Q
    | ||| || ||||||||| ||||||||| ||||||||| | |||||||||||||||| ||||| |||||||||||||||| | |||||||| ||| ||||    
T  24676209 cattggtggtgcttctcc-aagtttactgttgtcagtc-cctgcctcaccaatgtcatgtaaaccggtggatcatgcatgttttttctttggtaacatgg 24676112  T
Q  221 ttttttaatatatattt 237  Q
     ||||||||| ||||||    
T  24676111 ctttttaatacatattt 24676095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 14619175 - 14619389
Alignment:
Q  21 tatacttgttatttacttctttatcttaattttaatttgacacaaaatgacaaactttacctctcctagatatatcttatgagaaatcacaaaaatacct 120  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||   | || ||| | ||||||||||||||| || |    
T  14619175 tatatttgttatttagttctttatcttaattttaatttgacacaaaatgacaaacattgcccctccagaacatgtctcaagagaaatcacaaaaacacat 14619274  T
Q  121 -cgttgatgctgcttctccaaagtttactattgtcagtctcttgcctcaccaatgtcacgtaaaacggtggatcatgcatgctctttctttgataatatg 219  Q
       ||| || |||||||||||||  |||| ||||| || |||| |||||||||||| | ||  ||| ||||||||||||| |||||||| || ||| |||    
T  14619275 gatttggtggtgcttctccaaag-ctactgttgtcggtgtcttccctcaccaatgttatgttgaacagtggatcatgcattctctttctatggtaacatg 14619373  T
Q  220 gttttttaatatatat 235  Q
    ||||||||||||||||    
T  14619374 gttttttaatatatat 14619389  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 9326092 - 9325893
Alignment:
Q  29 ttatttacttctttatcttaattttaatttgacacaaaatgacaaactttacctctcctagatatatcttatgagaaatcacaaaaatacctcgttgatg 128  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||   |||||||||| | |||||||||||||||    ||| ||    
T  9326092 ttatttagttctgtatcttaattttaatttgacacaaagtgacaaactttccctctcctgagtatatcttataaaaaatcacaaaaatactagattggtg 9325993  T
Q  129 ctgcttctccaaagtttactattgtcagtctcttgcctcaccaatgtcacgtaaaacggtggatcatgcatgctctttctttgataatatggttttttaa 228  Q
       ||||| | ||||||||| |||||| || |||| |||||||||| || ||||||||||||||||||||||  ||||||||| ||| |||  |||||||    
T  9325992 -gacttcttc-aagtttactgttgtcaatcccttgtctcaccaatgacatgtaaaacggtggatcatgcatgtgctttctttggtaacatgactttttaa 9325895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 9372814 - 9372615
Alignment:
Q  29 ttatttacttctttatcttaattttaatttgacacaaaatgacaaactttacctctcctagatatatcttatgagaaatcacaaaaatacctcgttgatg 128  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||   |||||||||| | |||||||||||||||    ||| ||    
T  9372814 ttatttagttctgtatcttaattttaatttgacacaaagtgacaaactttccctctcctgagtatatcttataaaaaatcacaaaaatactagattggtg 9372715  T
Q  129 ctgcttctccaaagtttactattgtcagtctcttgcctcaccaatgtcacgtaaaacggtggatcatgcatgctctttctttgataatatggttttttaa 228  Q
       ||||| | ||||||||| |||||| || |||| |||||||||| || ||||||||||||||||||||||  ||||||||| ||| |||  |||||||    
T  9372714 -gacttcttc-aagtttactgttgtcaatcccttgtctcaccaatgacatgtaaaacggtggatcatgcatgtgctttctttggtaacatgactttttaa 9372617  T

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Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 30751925 - 30752139
Alignment:
Q  21 tatacttgttatttacttctttatcttaattttaatttgacacaaaatgacaaactttacctctcctagatatatcttatgagaaatcacaaaaatacct 120  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  30751925 tatacttattatttagttctttatcttaattttaatttgacacaaagtgacaaactttgcctcttctagatatatcttatgataaatcacaaaaatacct 30752024  T
Q  121 cgttgatgctgcttctccaaagtttactattgtcagtctcttgcctcaccaatgtcacgtaaaacggtggatcatgcatgctctttctttgataatatgg 220  Q
    | ||| || ||||||||| ||||||||| ||||||||| | |||||||||||||||| ||||| ||||||||||||||||  ||||||||| ||| ||||    
T  30752025 cattggtggtgcttctcc-aagtttactgttgtcagtc-cctgcctcaccaatgtcatgtaaaccggtggatcatgcatgtgctttctttggtaacatgg 30752122  T
Q  221 ttttttaatatatattt 237  Q
     ||||||||| ||||||    
T  30752123 ctttttaatacatattt 30752139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 30750114 - 30750328
Alignment:
Q  21 tatacttgttatttacttctttatcttaattttaatttgacacaaaatgacaaactttacctctcctagatatatcttatgagaaatcacaaaaatacct 120  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  30750114 tatacttattatttagttctttatcttaattttaatttgacacaaagtgacaaactttgcctcttctagatatatcttatgataaatcacaaaaatacct 30750213  T
Q  121 cgttgatgctgcttctccaaagtttactattgtcagtctcttgcctcaccaatgtcacgtaaaacggtggatcatgcatgctctttctttgataatatgg 220  Q
    | ||| || ||||||||| ||||||||| ||||||||| | |||||||||||||||| ||||| ||||||||||||||||   |||||||| ||| ||||    
T  30750214 cattggtggtgcttctcc-aagtttactgttgtcagtc-cctgcctcaccaatgtcatgtaaaccggtggatcatgcatgtaatttctttggtaacatgg 30750311  T
Q  221 ttttttaatatatattt 237  Q
     ||||||||| ||||||    
T  30750312 ctttttaatacatattt 30750328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 30771565 - 30771742
Alignment:
Q  21 tatacttgttatttacttctttatcttaattttaatttgacacaaaatgacaaactttacctctcctagatatatcttatgagaaatcacaaaaatacct 120  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  30771565 tatacttattatttagttctttatcttaattttaatttgacacaaagtgacaaactttgcctcttctagatatatcttatgataaatcacaaaaatacct 30771664  T
Q  121 cgttgatgctgcttctccaaagtttactattgtcagtctcttgcctcaccaatgtcacgtaaaacggtggatcatgcatg 200  Q
    | ||| || ||||||||| ||||||||| ||||||||| | |||||||||||||||| ||||| ||||||||||||||||    
T  30771665 cattggtggtgcttctcc-aagtttactgttgtcagtc-cctgcctcaccaatgtcatgtaaaccggtggatcatgcatg 30771742  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 4361195 - 4361249
Alignment:
Q  183 aacggtggatcatgcatgctctttctttgataatatggttttttaatatatattt 237  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||||||||||||    
T  4361195 aacggtggattatgcatgctctttttttgataacatggttttttaatatatattt 4361249  T

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Target: scaffold0005 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 198202 - 197988
Alignment:
Q  21 tatacttgttatttacttctttatcttaattttaatttgacacaaaatgacaaactttacctctcctagatatatcttatgagaaatcacaaaaatacct 120  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||   | || ||| | ||||||||||||||| || |    
T  198202 tatatttgttatttagttctttatcttaattttaatttgacacaaaatgacaaacattgcccctccagaacatgtctcaagagaaatcacaaaaacacat 198103  T
Q  121 -cgttgatgctgcttctccaaagtttactattgtcagtctcttgcctcaccaatgtcacgtaaaacggtggatcatgcatgctctttctttgataatatg 219  Q
       ||| || |||||||||||||  |||| ||||| || |||| |||||||||||| | ||  ||| ||||||||||||| |||||||| || ||| |||    
T  198102 gatttggtggtgcttctccaaag-ctactgttgtcggtgtcttccctcaccaatgttatgttgaacagtggatcatgcattctctttctatggtaacatg 198004  T
Q  220 gttttttaatatatat 235  Q
    ||||||||||||||||    
T  198003 gttttttaatatatat 197988  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 292380 - 292468
Alignment:
Q  32 tttacttctttatcttaattttaatttgacacaaaatgacaaactttacctctcctagatatatcttatgagaaatcacaaaaatacct 120  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||| | ||||||||||||| |||||||||||||||||    
T  292380 tttagttctttatcttaattttaatttaacacaaagtgacaaactttgcctctccgaaatatatcttatgaaaaatcacaaaaatacct 292468  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 12868843 - 12868930
Alignment:
Q  150 ttgtcagtctcttgcctcaccaatgtcacgtaaaacggtggatcatgcatgctctttctttgataatatggttttttaatatatattt 237  Q
    |||| ||| |||||| |||||||||||||||| || || ||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  12868843 ttgttagtgtcttgcatcaccaatgtcacgtagaatggcggatcatgcatgctctttctttggtaacatggttttttaatatatattt 12868930  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 2482670 - 2482596
Alignment:
Q  47 taattttaatttgacacaaaatgacaaactttacctctcctagatatatcttatgagaaatcacaaaaatacctc 121  Q
    ||||||| |||||||| ||||||||||| ||| ||||| || ||||| | | ||||||||||||||||| |||||    
T  2482670 taattttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaaatcacaaaaacacctc 2482596  T

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