View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21162_low_18 (Length: 249)
Name: NF21162_low_18
Description: NF21162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21162_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 94 - 231
Target Start/End: Complemental strand, 43550679 - 43550542
Alignment:
| Q |
94 |
tgagtaagcttagagtgtagagggacaatttgtgttttcaatttatttaaccaataatgaagaaagcataaataatgctcgaataattaatggtcacttg |
193 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43550679 |
tgagtaagtttagagtgtagagggacaatttgtgttttcaatttatttaaccaatattgaagaaagcataaataatgctcgaataattaatggtcacttg |
43550580 |
T |
|
| Q |
194 |
gaatggagaaagcacaaaacatctcacaatggcctacc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43550579 |
gaatggagaaagcacaaaacatctcacaatggcctacc |
43550542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 43550738 - 43550705
Alignment:
| Q |
1 |
tattgaagaaatcaaattagaatcattttcaata |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
43550738 |
tattgaagaaatcaaattagaatcattttcaata |
43550705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 96181 - 96215
Alignment:
| Q |
1 |
tattgaagaaatcaaattagaatcattttcaatat |
35 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
96181 |
tattgaagaaatcaaattagaatcatttttaatat |
96215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University