View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21162_low_2 (Length: 613)
Name: NF21162_low_2
Description: NF21162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21162_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 11 - 597
Target Start/End: Complemental strand, 31346502 - 31345911
Alignment:
| Q |
11 |
cacagagagaaattcattcaacaaaaacaa----aagatgcatgctatatgagggagaggtctacaccttatctccatcatatatatggaaaattcttat |
106 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31346502 |
cacatagagaaattcattcaacaaaaacaattaaaagatgcatgctatatgagggagaggtctacagcttatctccatcatatatatggaaaattcttat |
31346403 |
T |
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| Q |
107 |
gatgatatgcgagccgatccaatggaagacacaatatatttgtttattttcttaaggataagctgattcagctattagatgaccataaaattcctctagt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31346402 |
gatgatatgcgagccgatccaatggaagacacaatatatttgtttattttcttaaggataagctgattcagctattagatgaccataaaattcctctagt |
31346303 |
T |
|
| Q |
207 |
caaggagatcaaaagcaagaggtattgtaatttgtaaataacatatctcttacaaccaagtcatagctaactgcgccgtcttctgaaaagctatt-aaaa |
305 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31346302 |
caaggagatcaaaagcaagaggtattgtaa-------ataacatatctcttacaaccaagtcatagctaactgcgccgtcttctgaaaagctatttaaaa |
31346210 |
T |
|
| Q |
306 |
cactactaagaagggcaggtttaagctagctgataagtgggttacataaatggccattgataactgtctactttcagccataaaaatggttacgatatca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31346209 |
cactactaagaagggcaggtttaagctagctgataagtgggttacataaatggccattgataactgtctactttcagccataaaaatggttatgatatca |
31346110 |
T |
|
| Q |
406 |
ttctccaaacccacatgatttagaagaaccggaaaaaggaataaagtggtcaagaaggtttgacatcctaaatgcctcttggtgaaaaa-------ttgg |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31346109 |
ttctccaaacccacatgatttagaagaaccggaaaaaggaataaagtggtcaagaaggtttgacatcctaaatgcctcttggtgaaaaattgcaagttgc |
31346010 |
T |
|
| Q |
499 |
aacacttcaatgaaacggaaatggaatcttggaaaaactgaattgttgcattaaacgcctcttgatgnnnnnnnntgtttcataaaagtatgaaagaaa |
597 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
31346009 |
aacacttcaatgaaacggaaatggaatcttggaaaaactgaattgttgcattaaacgcctcttgatgaaaaaaaatgtttcataaaagtataaaagaaa |
31345911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 194 - 565
Target Start/End: Complemental strand, 31357015 - 31356643
Alignment:
| Q |
194 |
aaattcctctagtcaaggagatcaaaagcaagaggtattgtaatttgtaaataacatatctcttacaaccaagtcatagctaactgcgccgtcttctgaa |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |
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| T |
31357015 |
aaattcctctagtcaaggagatcaaaagcaagaggtattgtaatttgtaaataacatatctcttacaaccaagtcatagctaattgcgctgtcttccgaa |
31356916 |
T |
|
| Q |
294 |
aagctatt-aaaacactactaagaagggcaggtttaagctagctgataagtgggttacataaatggccattgataactgtctactttcagccataaaaat |
392 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || |||| |||||||||||||||| |
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| T |
31356915 |
aagctatttaaaacactactaagaagggcatgtttaagctagctgataagtgggtggcataaatggccattgatagctatctattttcagccataaaaat |
31356816 |
T |
|
| Q |
393 |
ggttacgatatcattctccaaacccacatgatttagaagaaccggaaaaaggaataaagtggtcaagaaggtttgacatcctaaatgcctcttggtgaaa |
492 |
Q |
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| T |
31356815 |
ggttacgatatcattctccaaacccacatgatttagaagaaccggaaaaatgaataaagtggtcaagaaggtttgacatcctaaatgcctcttggtgaaa |
31356716 |
T |
|
| Q |
493 |
aattggaacacttcaatgaaacggaaatggaatcttggaaaaactgaattgttgcattaaacgcctcttgatg |
565 |
Q |
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||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |
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| T |
31356715 |
aattgcaacacttcaatgaaacggaaatgaaaacttggaaaaactgaattgttgcattaaacgcctctcgatg |
31356643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 31357139 - 31357036
Alignment:
| Q |
16 |
agagaaattcattcaacaaaaacaaaagatgcatgctatatgagggagaggtctacaccttatctccatcatatatatggaaaattcttatgatgatatg |
115 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31357139 |
agagaaattcattcaacaaaaagaaaagatgcatgctatctgagg---aggtctacaccttatctccatcatatatatggaaaattcttatgatgatatg |
31357043 |
T |
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| Q |
116 |
cgagccg |
122 |
Q |
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|||||| |
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| T |
31357042 |
tgagccg |
31357036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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