View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21162_low_23 (Length: 237)
Name: NF21162_low_23
Description: NF21162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21162_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8691140 - 8691360
Alignment:
| Q |
1 |
ttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttacaacaatgtttaaacttttaactttgaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8691140 |
ttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttacaacaatgtttaaacttttaactttgaaata |
8691239 |
T |
|
| Q |
101 |
agtatggtatgagttttttcagnnnnnnntgttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8691240 |
agtatggtatgagttttttcagaaaaaaatgttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaa |
8691339 |
T |
|
| Q |
201 |
agctgaagaggaaattgatag |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8691340 |
agctgaagaggaaattgatag |
8691360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 8705944 - 8706015
Alignment:
| Q |
142 |
tccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8705944 |
tccaaaattttgtagaggacttttgttttatgtcgcttgatgaagaaagctgagaaaaaagctgaaaaggaa |
8706015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 8744567 - 8744634
Alignment:
| Q |
146 |
aaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaa |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8744567 |
aaattttgtagaggacttttgttttatgtcgcttgatgaagaaagctgagaaaaatactgaagaggaa |
8744634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 8723260 - 8723350
Alignment:
| Q |
130 |
tgttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgata |
220 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||| |||||||||| ||||| |
|
|
| T |
8723260 |
tgttgattacgctccaaaattttgtagaggacttttgttttatgtcgcttgatgaaaaaagccgagataaaaggcgaagaggaaaatgata |
8723350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 14372018 - 14371953
Alignment:
| Q |
133 |
tgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaa |
198 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14372018 |
tgattatcatccgaaattttgtagaggacttttgttttatgtcgcttgatgaagaaagctgagaaa |
14371953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 8724711 - 8724780
Alignment:
| Q |
130 |
tgttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaa |
200 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
8724711 |
tgttgattatcatccaaa-ttttgtagaggacttttgttttatgtcgcctgatgaagaaatttgagaaaaa |
8724780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8705420 - 8705491
Alignment:
| Q |
1 |
ttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttacaa |
72 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | |||||||| | ||| || |||||||||||||||||| |
|
|
| T |
8705420 |
ttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacaa |
8705491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 8739912 - 8739994
Alignment:
| Q |
132 |
ttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaa |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| || |||| |||||| || || || |||||||||| ||||||||||| |
|
|
| T |
8739912 |
ttgattaccctccaaaattttgtagaggactcatgtcttatgtcacttgattaaaaatgccgagaaaaaaggtgaagaggaaa |
8739994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 14372307 - 14372237
Alignment:
| Q |
1 |
ttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttacaa |
72 |
Q |
| |
|
||||||||| | |||||||||||||||||||| | |||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
14372307 |
ttaaaagcagccgggtgattcatgaatatcatgataccacctttgaagat-accaggtttgttttgttacaa |
14372237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University