View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21162_low_24 (Length: 227)
Name: NF21162_low_24
Description: NF21162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21162_low_24 |
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| [»] chr4 (3 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 64 - 227
Target Start/End: Complemental strand, 18090536 - 18090362
Alignment:
| Q |
64 |
tttcaacttcattcattaagaaagcaaaacagat-------aggaccaaactagggggttctaagaatttccctcccaagtacacgaccccaatgttttg |
156 |
Q |
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| T |
18090536 |
tttcaacttcattcgttaagaaagcaaaacagatgaaaagaaggaccaaactagggggttctaagaatttccctcccaagtacacgaccccaatgttttg |
18090437 |
T |
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| Q |
157 |
gcagcctgagc-aatctcat---taacctcattacaacaacgattaataaaaacaacagaaacatcagccgtatt |
227 |
Q |
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| T |
18090436 |
gcagccttagcaaatctcatgtgcaacctcattacaacaacgattaataaaaacaacagaaacatcagccatatt |
18090362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18090598 - 18090557
Alignment:
| Q |
1 |
aattactccttagaacaacttaagggtgattttgtattccac |
42 |
Q |
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| T |
18090598 |
aattactccttagaacaacttaagggtgattttgtattccac |
18090557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 30143413 - 30143512
Alignment:
| Q |
121 |
gaatttccctcccaagtacacgaccccaatgttttggcagcctgagcaatctcat---taacctcattacaacaacgattaataaaaacaacagaaacat |
217 |
Q |
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| T |
30143413 |
gaatttccctcccaagtacgagtccctaaagttttggcagcctgagcaagctcatgcgcagcctcattacaataacgactagtaaaaacaacataaacat |
30143512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 64 - 227
Target Start/End: Complemental strand, 52758317 - 52758143
Alignment:
| Q |
64 |
tttcaacttcattcattaagaaagcaaaacagat-------aggaccaaactagggggttctaagaatttccctcccaagtacacgaccccaatgttttg |
156 |
Q |
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| T |
52758317 |
tttcaacttcattcgttaagaaagcaaaacagatgaaaagaaggaccaaactagggggttctaagaatttccctcccaagtacacgaccccaatgttttg |
52758218 |
T |
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| Q |
157 |
gcagcctgagc-aatctcat---taacctcattacaacaacgattaataaaaacaacagaaacatcagccgtatt |
227 |
Q |
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| T |
52758217 |
gcagccttagcaaatctcatgtgcaacctcattacaacaacgattaataaaaacaacagaaacatcagccatatt |
52758143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 23548143 - 23548034
Alignment:
| Q |
121 |
gaatttccctcccaagtacacgaccccaatgttttggcagcctgagcaatctcatt---aacctcattacaacaacgattaataaaaacaacagaaacat |
217 |
Q |
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| T |
23548143 |
gaatttccctcccaagtacgagtccctaaagttttggcagcctgagcaagctcatgggcagcctcattacaataacgactaataaaaacaacagaaacat |
23548044 |
T |
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| Q |
218 |
cagccgtatt |
227 |
Q |
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| T |
23548043 |
cagccatatt |
23548034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52758381 - 52758340
Alignment:
| Q |
1 |
aattactccttagaacaacttaagggtgattttgtattccac |
42 |
Q |
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| T |
52758381 |
aattactccttagaacaacttaagggtgattttgtattccac |
52758340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 23748975 - 23748866
Alignment:
| Q |
121 |
gaatttccctcccaagtacacgaccccaatgttttggcagcctgagcaatctcat---taacctcattacaacaacgattaataaaaacaacagaaacat |
217 |
Q |
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||||| ||||||||||||| ||||||||||||| || ||||||||||| ||||| | ||| ||| || |||| ||||||||| ||||||||||| |
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| T |
23748975 |
gaattcccctcccaagtacgagaccccaatgtttaggaagcctgagcaagctcatgcgcagccttatttcagacacgactaataaaaaaaacagaaacat |
23748876 |
T |
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| Q |
218 |
cagccgtatt |
227 |
Q |
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| T |
23748875 |
cagccatatt |
23748866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 14245587 - 14245549
Alignment:
| Q |
129 |
ctcccaagtacacgaccccaatgttttggcagcctgagc |
167 |
Q |
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| T |
14245587 |
ctcccaagtacacgaccccaaagttttgccagcctgagc |
14245549 |
T |
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