View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21162_low_3 (Length: 573)
Name: NF21162_low_3
Description: NF21162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21162_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 9 - 557
Target Start/End: Complemental strand, 2361429 - 2360893
Alignment:
| Q |
9 |
aagaaacagaaacagaaccaccggaggaagaaaaacaagagctccggtgagtattccggcgaagaaataccgtggagtgaggcagagaccatggggaaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2361429 |
aagaaacagaaacagaaccaccggaggaagaaaaacaagagctccggttagtattccggcgaagaaataccgtggagtgaggcagagaccatggggaaaa |
2361330 |
T |
|
| Q |
109 |
tgggcggcggagataagagacccggcgcgtggagtgcgtgtgtggcttggtacatttcaaacggctgaagaagctgctattgtgtacgacaacgcggcta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2361329 |
tgggcggcggagataagagacccggcgcgtggagtgcgtgtgtggcttggtacatttcaaacggctgaagaagctgctattgtgtacgacaacgcggcta |
2361230 |
T |
|
| Q |
209 |
ttaagttgcgtggaccagacgcgctaactaatttcataactccacctgtaagtgcagctgccacgtgtcagttatcatcaccaccaccggaaaatgaaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2361229 |
ttaagttgcgtggaccagacgcgctaactaatttcataactccacctgtaagtgcagctgccacgtgtcagttatcatcaccaccaccggaaaatgaaat |
2361130 |
T |
|
| Q |
309 |
tcctcttccgtcattaccgttaccggcaaactccggtgaagaatctcaatctcaatcacaatctcaaaacaataataataagagtttattttctcctact |
408 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2361129 |
tcctctttcgtcattaccgttaccggcaaactccggtgaagaatctcaatc------------tcaaaacaataataataagagtttattttctcctact |
2361042 |
T |
|
| Q |
409 |
tcagttcttcaatgttgttcatcttctgaagaagtagctgaatctgaatcaatgttttcaattccaagtgatatacagtttgattttcaagattcttcac |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2361041 |
tcagttcttcaatgttgttcatcttctgaagaagtagctgaatctgaatcaatgttttcaattccaagtgatatacagtttgattttcaagattcttcac |
2360942 |
T |
|
| Q |
509 |
aagcaaatgatgcattttacaacttcaatggattctcagagagcatgtt |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2360941 |
aagcaaatgatgcattttacaacttcaatggattctcagagagcatgtt |
2360893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 41747936 - 41747998
Alignment:
| Q |
69 |
gaagaaataccgtggagtgaggcagagaccatggggaaaatgggcggcggagataagagaccc |
131 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41747936 |
gaagaaatatcgtggagtgagacagagaccttggggaaaatgggcggcggagataagagaccc |
41747998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 33720985 - 33721025
Alignment:
| Q |
82 |
ggagtgaggcagagaccatggggaaaatgggcggcggagat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
33720985 |
ggagtgaggcagagaccatggggaaaatgggctgctgagat |
33721025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 33735626 - 33735679
Alignment:
| Q |
69 |
gaagaaataccgtggagtgaggcagagaccatggggaaaatgggcggcggagat |
122 |
Q |
| |
|
|||||| ||| | |||||||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
33735626 |
gaagaagtacagaggagtgaggcagaggccatggggaaaatgggctgctgagat |
33735679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 33718966 - 33719006
Alignment:
| Q |
82 |
ggagtgaggcagagaccatggggaaaatgggcggcggagat |
122 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
33718966 |
ggagtgagacagagaccatggggaaaatgggctgctgagat |
33719006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 43490208 - 43490153
Alignment:
| Q |
73 |
aaataccgtggagtgaggcagagaccatggggaaaatgggcggcggagataagaga |
128 |
Q |
| |
|
|||||| | ||||| || ||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
43490208 |
aaatacagaggagtaagacagagaccatggggaaaatgggcagcagagataagaga |
43490153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 41197538 - 41197611
Alignment:
| Q |
157 |
ggtacatttcaaacggctgaagaagctgctattgtgtacgacaacgcggctattaagttgcgtggaccagacgc |
230 |
Q |
| |
|
||||| ||| |||| || |||||||||||||| || || ||||| || ||||||||| | |||||||||||||| |
|
|
| T |
41197538 |
ggtacttttgaaactgcagaagaagctgctatggtttatgacaatgccgctattaagcttcgtggaccagacgc |
41197611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University