View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21162_low_8 (Length: 346)
Name: NF21162_low_8
Description: NF21162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21162_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 74 - 329
Target Start/End: Complemental strand, 47771902 - 47771647
Alignment:
| Q |
74 |
tatttattcctaaatatcagagagaccaacttttacaattttatagaccaatttagtgatttacacataaaagaatatatattcacccttatgaatgaat |
173 |
Q |
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| T |
47771902 |
tatttattcctaaatttcagagagaccaacttttacaattttatagaccaatttagtgatttacacataaaagaatatatattcacccttatgaatgaat |
47771803 |
T |
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| Q |
174 |
tctatcgagggtatggatcagtattggaagcgtggttcatcgattcacccgatgttgttgaacctatattgccagcccataactccatgtcttgcaggct |
273 |
Q |
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| T |
47771802 |
tctatcgagggtatggatcagtattggaagcgtggttcaccgattcacccgatgttgttgaacctatattgccagcccataactccatgtcttgtaggct |
47771703 |
T |
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| Q |
274 |
tctagttccacttccataaaaataggcaggttttgaaggtattgagagagtgagag |
329 |
Q |
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| T |
47771702 |
tctggttccacttccataaaaataggcaggttttgaaggtattgagagagtgagag |
47771647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 157 - 329
Target Start/End: Complemental strand, 47775971 - 47775799
Alignment:
| Q |
157 |
cacccttatgaatgaattctatcgagggtatggatcagtattggaagcgtggttcatcgattcacccgatgttgttgaacctatattgccagcccataac |
256 |
Q |
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| T |
47775971 |
cacccttatgaatgaaatttatcgagggtatggatcagtatttgaagcctggttaatcgattcacccgatactgttgaatctatattgccagcccataac |
47775872 |
T |
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| Q |
257 |
tccatgtcttgcaggcttctagttccacttccataaaaataggcaggttttgaaggtattgagagagtgagag |
329 |
Q |
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| T |
47775871 |
tccatgtcatgtaggcttctagttccacttccataaaaataggcaggttttgaaggtattgagagagtgagag |
47775799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 47757514 - 47757584
Alignment:
| Q |
156 |
tcacccttatgaatgaattctatcgagggtatggatcagtattggaagcgtggttcatcgattcacccgat |
226 |
Q |
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| T |
47757514 |
tcacccttatgaatgaaatctatcgagggtatgggtcagtaattgaagcatggtttatcgattcacccgat |
47757584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 47715394 - 47715448
Alignment:
| Q |
156 |
tcacccttatgaatgaattctatcgagggtatggatcagtattggaagcgtggtt |
210 |
Q |
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| T |
47715394 |
tcacccttatgaatgaaatctatcgagggtatggatcagtaattgaagcatggtt |
47715448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 47710683 - 47710737
Alignment:
| Q |
156 |
tcacccttatgaatgaattctatcgagggtatggatcagtattggaagcgtggtt |
210 |
Q |
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| T |
47710683 |
tcacccttatgaatgaaatctatcgagggtatgggtcagtaattgaagcatggtt |
47710737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 27367879 - 27367929
Alignment:
| Q |
273 |
ttctagttccacttccataaaaataggcaggttttgaaggtattgagagag |
323 |
Q |
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| T |
27367879 |
ttctagttccacttcctataaaatacgcaggtttcgaaggtattgagagag |
27367929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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