View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21162_low_9 (Length: 332)
Name: NF21162_low_9
Description: NF21162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21162_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 36939407 - 36939702
Alignment:
| Q |
19 |
gcaaaaggtgcacaaactacagctttagcagggactttgggatacatggctcctgaatgtgctaccacaggaagagctagtaaagaaacagacgtgtata |
118 |
Q |
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| T |
36939407 |
gcaaaaggtgcacaaactacagctttagcagggactttgggatacatggctcctgaatgtgctaccacaggaagagctagtaaagaaacagacgtgtata |
36939506 |
T |
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| Q |
119 |
gttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaaggctcaagaaaatgaaatacatattgtggagtgggtttgggg |
218 |
Q |
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| T |
36939507 |
gttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaaggctcaagaaaatgaaatacatattgtggagtgggtttgggg |
36939606 |
T |
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| Q |
219 |
gctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttgaacaagaacaaatcaagtgcatgatgattgttggtct |
314 |
Q |
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| T |
36939607 |
gctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttgaacaagaacaaatcaagtgcatgatgattgttggtct |
36939702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 36941711 - 36941422
Alignment:
| Q |
19 |
gcaaaaggtgcacaaactacagctttagcagggactttgggatacatggctcctgaatgtgctaccacaggaagagctagtaaagaaacagacgtgtata |
118 |
Q |
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|||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||| |
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| T |
36941711 |
gcaaaaggtggacaaaccacagctttagcagggactatgggatacatggctcctgaatgtgctaccacaggaagggccagtaaagaaaccgatgtgtata |
36941612 |
T |
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| Q |
119 |
gttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaaggctcaagaaaatgaaatacatattgtggagtgggtttgggg |
218 |
Q |
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| T |
36941611 |
gttttggaattgttgctttagagatagcttgtggaagaaaaccaataa------ttaatgctcaagaaaatgaaataaacattgtggaatgggtttgggg |
36941518 |
T |
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| Q |
219 |
gctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttgaacaagaacaaatcaagtgcatgatgattgttggtct |
314 |
Q |
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||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||||||||||||||||| |
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| T |
36941517 |
gctatatggaagagggagaattgttgaagcagtagatccaagactagatggagattatgaagaggaacaaatcaagtgcatgatgattgttggtct |
36941422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 3054491 - 3054432
Alignment:
| Q |
87 |
aggaagagctagtaaagaaacagacgtgtatagttttggtattgttgctttagagatagc |
146 |
Q |
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|||||| |||||||||||| | ||| ||||||||||||| ||||||||||| ||| |||| |
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| T |
3054491 |
aggaagggctagtaaagaatctgacatgtatagttttggaattgttgctttggagctagc |
3054432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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