View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_high_11 (Length: 539)

Name: NF21163_high_11
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_high_11
NF21163_high_11
[»] chr7 (1 HSPs)
chr7 (12-520)||(38144145-38144649)
[»] chr1 (2 HSPs)
chr1 (321-388)||(15613019-15613087)
chr1 (15-136)||(41316333-41316454)
[»] scaffold0110 (1 HSPs)
scaffold0110 (361-408)||(43406-43453)
[»] chr6 (4 HSPs)
chr6 (337-392)||(29949450-29949505)
chr6 (337-392)||(29953247-29953302)
chr6 (361-408)||(30149942-30149989)
chr6 (358-392)||(24738748-24738782)
[»] scaffold0014 (1 HSPs)
scaffold0014 (358-392)||(140672-140706)
[»] chr2 (1 HSPs)
chr2 (339-388)||(15062433-15062482)
[»] scaffold0308 (1 HSPs)
scaffold0308 (348-392)||(9397-9441)
[»] scaffold0019 (1 HSPs)
scaffold0019 (336-388)||(125680-125732)


Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 12 - 520
Target Start/End: Complemental strand, 38144649 - 38144145
Alignment:
Q  12 atcatcaacttgataaggcaattgcattagtcaatgaaattcataaccaaggcattcaggtggatttgtacacatgtagtatgcttattgatggtttgtc 111  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38144649 atcatcaacttgataaggcaattgcattagtcaaggaaattcataaccaaggcattcaggtggatttgtacacatgtagtatgcttattgatggtttgtc 38144550  T
Q  112 caaagggggaagacttaaggatgcatgcacaacaaatttttaaggatcttttgattagaggatacaatgtagatgttgttacttataaaaatatgatgag 211  Q
     ||||||||||||||||||||||||    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||    
T  38144549 taaagggggaagacttaaggatgca----caacaaatttttaaggatcttttgattaaaggatacaatgtagatgttgttacttataaatatatgatcag 38144454  T
Q  212 ttgtctttgttaagaaggtttggttgtaaaagcatctgctttgctataaaaaattaaagctaagggttgctttccaaatgctat-aactgttgagatgtt 310  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38144453 tggtctttgttaagaaggtttggttgtaaaagcatctgctttgctataaaaaattaaagctaagggttgctttccaaatgctataaactgttgagatgtt 38144354  T
Q  311 catttttgcactctttgaaagcagggagaatgataaagcagataaaattcttcgtgaaatgattgctagaggcctactataaagcataaaactaggtaca 410  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38144353 catttgtgcactctttgaaagcagggagaatgataaagcagataaaattcttcgtgaaatgattgctagaggcctactat-aagcataaaactaggtaca 38144255  T
Q  411 atgttacaatttattattttgaattttaatgacaaccatcaagtcnnnnnnncctttgatagttactcataagaatagatgtatcatgctctgggctaac 510  Q
    |||||||||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38144254 atgttacaatttattattttgaattttaatcacaaccatcaagtctttttttcctttgatagttactcataagaatagatgtatcatgctctgggctcac 38144155  T
Q  511 tgttagttta 520  Q
    | ||||||||    
T  38144154 tattagttta 38144145  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 15613019 - 15613087
Alignment:
Q  321 ctctttgaaagcagggagaatgataaa-gcagataaaattcttcgtgaaatgattgctagaggcctact 388  Q
    |||||||||||  | |||||||||||| || || |||||| |||||||||||||||||||||| |||||    
T  15613019 ctctttgaaagaggtgagaatgataaaagctgagaaaattattcgtgaaatgattgctagaggtctact 15613087  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 41316333 - 41316454
Alignment:
Q  15 atcaacttgataaggcaattgcattagtcaatgaaattcataaccaaggcattcaggtggatttgtacacatgtagtatgcttattgatggtttgtccaa 114  Q
    |||| ||||| ||||| ||||||||||| ||  ||||| |  |||||||||||||   |||| |||||||||  | ||| ||||||||||| || | |||    
T  41316333 atcatcttgacaaggctattgcattagtgaagaaaattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaa 41316432  T
Q  115 agggggaagacttaaggatgca 136  Q
    | | |||||||||||| |||||    
T  41316433 atgaggaagacttaagaatgca 41316454  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 408
Target Start/End: Complemental strand, 43453 - 43406
Alignment:
Q  361 ttcgtgaaatgattgctagaggcctactataaagcataaaactaggta 408  Q
    |||||||||||||||||||||| ||||| |||||  ||||||||||||    
T  43453 ttcgtgaaatgattgctagaggtctactctaaagagtaaaactaggta 43406  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 392
Target Start/End: Complemental strand, 29949505 - 29949450
Alignment:
Q  337 agaatgataaagcagataaaattcttcgtgaaatgattgctagaggcctactataa 392  Q
    |||||||||| || | |||| |||||||||||||||||| |||||| |||||||||    
T  29949505 agaatgataaggctgttaaacttcttcgtgaaatgattgttagaggtctactataa 29949450  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 392
Target Start/End: Complemental strand, 29953302 - 29953247
Alignment:
Q  337 agaatgataaagcagataaaattcttcgtgaaatgattgctagaggcctactataa 392  Q
    |||||||||| || | |||| |||||||||||||||||| |||||| |||||||||    
T  29953302 agaatgataaggctgttaaacttcttcgtgaaatgattgttagaggtctactataa 29953247  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 408
Target Start/End: Original strand, 30149942 - 30149989
Alignment:
Q  361 ttcgtgaaatgattgctagaggcctactataaagcataaaactaggta 408  Q
    |||||||||||||||||||||| ||||| |||||  ||||||||||||    
T  30149942 ttcgtgaaatgattgctagaggtctactctaaagagtaaaactaggta 30149989  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 392
Target Start/End: Complemental strand, 24738782 - 24738748
Alignment:
Q  358 ttcttcgtgaaatgattgctagaggcctactataa 392  Q
    ||||||||||||||||||||||||| |||||||||    
T  24738782 ttcttcgtgaaatgattgctagaggtctactataa 24738748  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 392
Target Start/End: Original strand, 140672 - 140706
Alignment:
Q  358 ttcttcgtgaaatgattgctagaggcctactataa 392  Q
    ||||||||||||||||||||||||| |||||||||    
T  140672 ttcttcgtgaaatgattgctagaggtctactataa 140706  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 15062482 - 15062433
Alignment:
Q  339 aatgataaagcagataaaattcttcgtgaaatgattgctagaggcctact 388  Q
    |||||||||||||| ||| |||||||||||||||| || ||||| |||||    
T  15062482 aatgataaagcagagaaacttcttcgtgaaatgatagcgagaggtctact 15062433  T

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Target: scaffold0308 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 392
Target Start/End: Original strand, 9397 - 9441
Alignment:
Q  348 gcagataaaattcttcgtgaaatgattgctagaggcctactataa 392  Q
    ||||| ||| |||| |||||||||||||||||||| |||||||||    
T  9397 gcagagaaacttctacgtgaaatgattgctagaggtctactataa 9441  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 125732 - 125680
Alignment:
Q  336 gagaatgataaagcagataaaattcttcgtgaaatgattgctagaggcctact 388  Q
    |||||||| || || || ||| ||||||||||||||||||||||||| |||||    
T  125732 gagaatgaaaaggcggagaaacttcttcgtgaaatgattgctagaggtctact 125680  T

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