View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_13 (Length: 528)
Name: NF21163_high_13
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 17725999 - 17726508
Alignment:
| Q |
1 |
attacagaacctgtcaatatattccaagttgagaaaagcatcaaccggtccttcagcttctgacttggtcctcacggttccaccaaaaaacggagccaac |
100 |
Q |
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| T |
17725999 |
attacagaacctgtcaatatattccaagttgagaaaagcatcaaccggtccttcagcttctgacttggtcctcacggttccaccaataaacggtgccaac |
17726098 |
T |
|
| Q |
101 |
aaaacataacccctaaccctaaccggtgccaactcaaccgaaccaaacccaagccgaaccgccaaattatgagctatattaccaccagccgagtcacccg |
200 |
Q |
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| T |
17726099 |
aaaacataacccctaacccgaaccggtgccaactcaaccgaaccaaacccaagccgaaccgccaaattatgagctatattaccaccagccgagtcacccg |
17726198 |
T |
|
| Q |
201 |
aaataaaaacccggttaaaatcagccacatggctcaaccatggatccatctcactcctcaaagcttcttcttgaagccacttaacagccatgaaaccatc |
300 |
Q |
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| T |
17726199 |
aaataaaaacccggttaaaatcagccacatggctcaaccaaggatccatctcactcttcaaagcttcttcttgaagccacttaacagccatgaaaccatc |
17726298 |
T |
|
| Q |
301 |
ttcaatagcacatggaagcctattctccggtgcaagtcgatagtcaggtgcaacaactactgcttcaagctcagaaacgagcttgaagcagtagttttga |
400 |
Q |
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| T |
17726299 |
ttcaatagcacatggaagcctattctccggtgcaagtcgatagtcaggcgcaacaactactgcttcaagctcagaagcgagcttgaagcagtagttttga |
17726398 |
T |
|
| Q |
401 |
caatttggccatgttcgtgacccgatgcagaagccgccgccgtgaatatagtaaaagattggtagctttttggagggtgatgagttagctggcctataga |
500 |
Q |
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| T |
17726399 |
caatttggccatgttcgtgatccgatgcagaagccgccaccgtgaatgtagtaaaagattggtagctttttggagggtgatgagttagctggcttataga |
17726498 |
T |
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| Q |
501 |
gtcgaaggtg |
510 |
Q |
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| T |
17726499 |
gtcgaaggtg |
17726508 |
T |
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