View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_high_16 (Length: 494)

Name: NF21163_high_16
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_high_16
NF21163_high_16
[»] chr4 (1 HSPs)
chr4 (18-482)||(30518335-30518799)
[»] chr2 (5 HSPs)
chr2 (26-233)||(38896052-38896259)
chr2 (33-233)||(5435618-5435818)
chr2 (18-224)||(42898031-42898237)
chr2 (91-233)||(17858924-17859066)
chr2 (78-150)||(40040593-40040665)
[»] chr3 (2 HSPs)
chr3 (35-230)||(12105837-12106033)
chr3 (35-230)||(46987914-46988110)
[»] chr1 (6 HSPs)
chr1 (18-204)||(28496293-28496482)
chr1 (119-219)||(36989078-36989178)
chr1 (122-233)||(52371452-52371563)
chr1 (83-153)||(42286921-42286991)
chr1 (89-153)||(4160178-4160242)
chr1 (191-233)||(31644421-31644463)
[»] chr5 (2 HSPs)
chr5 (101-233)||(12952373-12952505)
chr5 (104-233)||(12938224-12938353)
[»] chr8 (4 HSPs)
chr8 (92-186)||(33186506-33186600)
chr8 (124-233)||(3271561-3271670)
chr8 (104-233)||(30864796-30864925)
chr8 (38-153)||(5788930-5789045)


Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Original strand, 30518335 - 30518799
Alignment:
Q  18 catggtggacacaagttttctctggacacacataaactctcttctttatttctttgtttgttctctgcttaagcttccatggaagattatgtccacgtct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518335 catggtggacacaagttttctctggacacacataaactctcttctttatttctttgtttgttctctgcttaagcttccatggaagattatgtccacgtct 30518434  T
Q  118 atgcagttgaagattttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttggtgataaagctataact 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518435 atgcagttgaagattttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttggtgataaagctataact 30518534  T
Q  218 tctgcttcaggatctgtgcaaataaaaaagatcaataatgtttcttttatctaataaaaagttaattagctttgaatatacctattgatatattcaatca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518535 tctgcttcaggatctgtgcaaataaaaaagatcaataatgtttcttttatctaataaaaagttaattagctttgaatatacctattgatatattcaatca 30518634  T
Q  318 taaaggtgaagagagagttataaagggaagaaaaagagagaaaattaacatgcctggatttcctggaaggtttctttttctcttcaaagcaggaggatta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518635 taaaggtgaagagagagttataaagggaagaaaaagagagaaaattaacatgcctggatttcctggaaggtttctttttctcttcaaagcaggaggatta 30518734  T
Q  418 ttagaagcactcattgttggattttgagggaaattagcatttgtgttttctacttcatccatatt 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30518735 ttagaagcactcattgttggattttgagggaaattagcatttgtgatttctacttcatccatatt 30518799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 26 - 233
Target Start/End: Original strand, 38896052 - 38896259
Alignment:
Q  26 acacaagttttctctggacacacataaactctcttctttatttctttgtttgttctctgcttaagcttccatggaagattatgtccacgtctatgcagtt 125  Q
    ||||| || ||||||||||||||||| ||||||||| ||||||||||  ||||||| || || |||||||| || || ||||||||||||| ||| ||||    
T  38896052 acacatgtcttctctggacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatgtccacgtcgatgaagtt 38896151  T
Q  126 gaagattttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttggtgataaagctataacttctgcttc 225  Q
    ||||||||||||| ||||||||| | ||   |||  ||||||||| |||||||||||| ||||| | ||| ||||||||||||| ||| |||||||||||    
T  38896152 gaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatgtttttggtgataaagatatcacttctgcttc 38896251  T
Q  226 aggatctg 233  Q
    ||||||||    
T  38896252 aggatctg 38896259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 5435618 - 5435818
Alignment:
Q  33 ttttctctggacacacataaactctcttctttatttctttgtttgttctctgcttaagcttccatggaagattatgtccacgtctatgcagttgaagatt 132  Q
    ||||||||||||||||||| ||||||||| |||||| |||  ||||||| || || |||||||| || || ||||||||||||| ||| |||||||||||    
T  5435618 ttttctctggacacacatacactctcttccttatttttttacttgttctttgtttcagcttccaaggtaggttatgtccacgtcgatgaagttgaagatt 5435717  T
Q  133 ttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttggtgataaagctataacttctgcttcaggatct 232  Q
    |||||| ||||||||| | ||   |||  ||||||||| |||||||||||| ||||| | ||  ||||||||||||| ||| ||||||||||||||||||    
T  5435718 ttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatggttttggtgataaagatatcacttctgcttcaggatct 5435817  T
Q  233 g 233  Q
    |    
T  5435818 g 5435818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 42898237 - 42898031
Alignment:
Q  18 catggtggacacaagttttctctggacacacataaactctcttctttatttctttgtttgttctctgcttaagcttccatggaagattatgtccacgtct 117  Q
    ||||||| |||||||||   |||||||||||||||||| ||||| |||| || ||| ||||||| ||||| | ||||||||| | ||| ||||| | | |    
T  42898237 catggtgcacacaagttggttctggacacacataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctctttt 42898138  T
Q  118 atgcagttgaagattttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttggtgataaagctataact 217  Q
    ||| ||||||||||| |||||||||||||| |||||   |||  | ||||| | |||||| ||||| ||||| ||||| ||||| ||||| |||||||||    
T  42898137 atgaagttgaagattctgatctctttgaaatcctttgttacagatctcacaaatgaatctatttgttgccatcagtgtttttggcgataaggctataact 42898038  T
Q  218 tctgctt 224  Q
    || ||||    
T  42898037 tcagctt 42898031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 233
Target Start/End: Complemental strand, 17859066 - 17858924
Alignment:
Q  91 cttccatggaagattatgtccacgtctatgcagttgaagattttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccatg 190  Q
    |||||| || || |||| |||||||| ||| ||||||||||||||||| ||||||||| | ||   |||  ||||||||| |||||||||||| |||||     
T  17859066 cttccaaggtaggttatatccacgtcgatgaagttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatc 17858967  T
Q  191 agtgtctttggtgataaagctataacttctgcttcaggatctg 233  Q
    | ||  ||||||||||||| ||| |||| ||||||||| ||||    
T  17858966 aatgcttttggtgataaagatatcacttttgcttcagggtctg 17858924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 40040665 - 40040593
Alignment:
Q  78 ttctctgcttaagcttccatggaagattatgtccacgtctatgcagttgaagattttgatctctttgaaaacc 150  Q
    |||| ||||||||||||||||||||||| ||||| |||| ||| || || || ||||| ||||| | ||||||    
T  40040665 ttctttgcttaagcttccatggaagattgtgtcctcgtcgatgtagctgtaggttttggtctctcttaaaacc 40040593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 35 - 230
Target Start/End: Complemental strand, 12106033 - 12105837
Alignment:
Q  35 ttctctggacacacataaactctcttctttatttctttgtttgttctctgcttaagcttccatggaagattatgtccacgtctatgcagttgaagatttt 134  Q
    ||||||||||||||||| ||||||||| ||||||||||  ||||||| || || |||||||| || || |||| |||||||| ||| |||||||||||||    
T  12106033 ttctctggacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatatccacgtcgatgaagttgaagatttt 12105934  T
Q  135 gatctctttgaaaa-cctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttggtgataaagctataacttctgcttcaggat 230  Q
    |||  ||||||||| |||||   |||  ||||||||| |||||||||||| ||||| | ||  ||||||||||||| ||| ||||||||||||||||    
T  12105933 gattcctttgaaaatccttttaaacagatttcacacacgaatctgtttgttgccatcaatggttttggtgataaagatatcacttctgcttcaggat 12105837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 35 - 230
Target Start/End: Original strand, 46987914 - 46988110
Alignment:
Q  35 ttctctggacacacataaactctcttctttatttctttgtttgttctctgcttaagcttccatggaagattatgtccacgtctatgcagttgaagatttt 134  Q
    ||||||||||||||||| ||||||||| ||||||||||  ||||||| || || |||||||| || || |||| |||||||| ||| |||||||||||||    
T  46987914 ttctctggacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatatccacgtcgatgaagttgaagatttt 46988013  T
Q  135 gatctctttgaaaa-cctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttggtgataaagctataacttctgcttcaggat 230  Q
    |||  ||||||||| |||||   |||  ||||||||| |||||||||||| ||||| | ||  ||||||||||||| ||| ||||||||||||||||    
T  46988014 gattcctttgaaaatccttttaaacagatttcacacacgaatctgtttgttgccatcaatggttttggtgataaagatatcacttctgcttcaggat 46988110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 28496293 - 28496482
Alignment:
Q  18 catggtggacacaagttttctctggacacacataaactctcttctttatt---tctttgtttgttctctgcttaagcttccatggaagattatgtccacg 114  Q
    ||||||||||||| || ||||||||||| |  |||||| ||||||| ||    |||||||| | ||||||  |||||||||||||||| || ||||| |     
T  28496293 catggtggacacaggtcttctctggacagatgtaaactttcttcttgataacatctttgttggatctctgtctaagcttccatggaaggttgtgtcctct 28496392  T
Q  115 tctatgcagttgaagattttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttggtga 204  Q
    |||||| |||||||| |||||||||||||| || |||||    ||| ||||||| | |||||||||||| |||||||||||||| |||||    
T  28496393 tctatgtagttgaaggttttgatctctttggaaccctttgttgcatatttcacagatgaatctgtttgttgccatgagtgtcttcggtga 28496482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 36989178 - 36989078
Alignment:
Q  119 tgcagttgaagattttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttggtgataaagctataactt 218  Q
    ||||||||||||||||| |||||||||||||| ||   |||| ||||||| | |||||||||||||||||| |||||  |||||||||  ||||| ||||    
T  36989178 tgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcactt 36989079  T
Q  219 c 219  Q
    |    
T  36989078 c 36989078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 52371563 - 52371452
Alignment:
Q  122 agttgaagattttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttggtgataaagctataacttctg 221  Q
    ||||||||||||||||| ||||||||| | ||   |||  ||||||||| ||||||| |||| ||||| | ||  ||||||||||||| ||| |||||||    
T  52371563 agttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgcttgttgccatcaatggttttggtgataaagatatcacttctg 52371464  T
Q  222 cttcaggatctg 233  Q
    ||||||||||||    
T  52371463 cttcaggatctg 52371452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 42286991 - 42286921
Alignment:
Q  83 tgcttaagcttccatggaagattatgtccacgtctatgcagttgaagattttgatctctttgaaaaccttt 153  Q
    ||||| |||||||| |||||||| ||||| | |||||| |||||||||||||| || |||||||| |||||    
T  42286991 tgctttagcttccaaggaagattgtgtcctcttctatgaagttgaagattttgctccctttgaaacccttt 42286921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 4160242 - 4160178
Alignment:
Q  89 agcttccatggaagattatgtccacgtctatgcagttgaagattttgatctctttgaaaaccttt 153  Q
    ||||||||||| | ||||||||| |   |||| || |||||||||||||||||||||||||||||    
T  4160242 agcttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttgaaaaccttt 4160178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 31644421 - 31644463
Alignment:
Q  191 agtgtctttggtgataaagctataacttctgcttcaggatctg 233  Q
    ||||||||||||||||||||||| ||||| || ||||||||||    
T  31644421 agtgtctttggtgataaagctatcacttcagcatcaggatctg 31644463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 101 - 233
Target Start/End: Complemental strand, 12952505 - 12952373
Alignment:
Q  101 agattatgtccacgtctatgcagttgaagattttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttg 200  Q
    ||||||| |||||| | ||| ||||||||||||||||| ||||||||| | ||   |||  ||||||||| |||||||||||| ||||| | ||  ||||    
T  12952505 agattatatccacgacgatgaagttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatggttttg 12952406  T
Q  201 gtgataaagctataacttctgcttcaggatctg 233  Q
    ||||||||| ||| ||||||||||| |||||||    
T  12952405 gtgataaagatatcacttctgcttccggatctg 12952373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 104 - 233
Target Start/End: Complemental strand, 12938353 - 12938224
Alignment:
Q  104 ttatgtccacgtctatgcagttgaagattttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttggtg 203  Q
    |||| |||||| | ||| ||||||||||||||||| ||||||||| | ||   |||  ||||||||| |||||||||||| ||||| | ||  |||||||    
T  12938353 ttatatccacgacgatgaagttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatggttttggtg 12938254  T
Q  204 ataaagctataacttctgcttcaggatctg 233  Q
    |||||| ||| ||||||||||| |||||||    
T  12938253 ataaagatatcacttctgcttccggatctg 12938224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 33186600 - 33186506
Alignment:
Q  92 ttccatggaagattatgtccacgtctatgcagttgaagattttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagc 186  Q
    |||||||| ||||||||||| | |||||| ||||||||||| |||||||||||||| |||||   |||| |||||||||  ||||||||||||||    
T  33186600 ttccatggtagattatgtcctcttctatgtagttgaagattctgatctctttgaaaccctttgttacatatttcacacacaaatctgtttgtagc 33186506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 3271561 - 3271670
Alignment:
Q  124 ttgaagattttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttggtgataaagctataacttctgct 223  Q
    ||||||||||||||| ||||||||| | ||   |||  ||||||||| |||||||||||| ||||| | ||  ||||||||||||| ||| |||| ||||    
T  3271561 ttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatggttttggtgataaagatatcacttttgct 3271660  T
Q  224 tcaggatctg 233  Q
    ||||||||||    
T  3271661 tcaggatctg 3271670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 233
Target Start/End: Complemental strand, 30864925 - 30864796
Alignment:
Q  104 ttatgtccacgtctatgcagttgaagattttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccatgagtgtctttggtg 203  Q
    |||| |||||||| ||| ||||||||||||||||| |||| |||| | ||   |||  |||| |||| |||||||||||| ||||| | ||  ||| |||    
T  30864925 ttatatccacgtcgatgaagttgaagattttgatccctttaaaaatcctttagacaaatttctcacacgaatctgtttgttgccatcaatggttttagtg 30864826  T
Q  204 ataaagctataacttctgcttcaggatctg 233  Q
    |||||| ||| |||| ||||||||||||||    
T  30864825 ataaagatatcacttatgcttcaggatctg 30864796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 5788930 - 5789045
Alignment:
Q  38 tctggacacacataaactctcttctttatttctttgtttgttctctgcttaagcttccatggaagattatgtccacgtctatgcagttgaagattttgat 137  Q
    |||||||| ||||| ||| ||||  | || |||||  ||||||| || || | ||||||||| | |||||| || | ||| || ||||||||||||||||    
T  5788930 tctggacatacatatactttctttctaatctctttacttgttctttgtttcaacttccatggtaaattatgacctcttctgtgaagttgaagattttgat 5789029  T
Q  138 ctctttgaaaaccttt 153  Q
    |||||||||| |||||    
T  5789030 ctctttgaaacccttt 5789045  T

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