View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_18 (Length: 492)
Name: NF21163_high_18
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 31 - 478
Target Start/End: Complemental strand, 29163834 - 29163387
Alignment:
| Q |
31 |
gttaaaaacta-ggcacaaacaaaattatttctacaactttccacaaggcatggcataagaaaccaaaagaaagtcaataataattcacgtgtcaacccc |
129 |
Q |
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| T |
29163834 |
gttaaaaactaaggcacaaacaaaattatttctgcaactttccacaaggcatggcataagaaaccaaaagaa-gtcaataataattcacgtgtcaacccc |
29163736 |
T |
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| Q |
130 |
cgagctgttagttccacactatgctttggtggacagttaagtgcccnnnnnnnttaaatgagaaaacatgcacttgttgttgatgctatatatatattcg |
229 |
Q |
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| T |
29163735 |
cgagctgttagttccacactatgttttggtggacagttaagtgcccaaaaaaattaaatgagaaaacatgcacttgttgttgatgctatatatatattcg |
29163636 |
T |
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| Q |
230 |
acacccaaatcaagatatcatatgcatatcaacattataattatcatcactgagattttagggcattttcaagtaattaaagagcaggggaaatatggtg |
329 |
Q |
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| T |
29163635 |
acacccaaatcaagatatcatatgcatatcaacattataattatcatcactgagattttagggtattttcaagtaattaaagagcaggggaaatatggtg |
29163536 |
T |
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| Q |
330 |
gtgaaagtttatggttcaattaatgcagcatgtcctcagagggtgatggcttgcctcttagaaaaagaggtagaatttgaaattgtgcatattgatcttg |
429 |
Q |
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| T |
29163535 |
gtgaaagtttatggttcaattaatgcagcatgtcctcagagggtgatggcttgcctcttagaaaaagaggtagaatttgaaattgtgcatattgatcttg |
29163436 |
T |
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| Q |
430 |
ataaaggagagcaaaagaaacctgaattccttctcctccaggtagtgta |
478 |
Q |
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| T |
29163435 |
ataaaggagagcaaaagaaacctgaattccttctcctccaggtagtgta |
29163387 |
T |
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