View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_high_2 (Length: 703)

Name: NF21163_high_2
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_high_2
NF21163_high_2
[»] chr8 (1 HSPs)
chr8 (18-682)||(30015923-30016583)


Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 682
Target Start/End: Complemental strand, 30016583 - 30015923
Alignment:
Q  18 ccaaactcatgcaacgtcctcacaaactaccacctctactatatatatagctagggaaaacaaaaccacatttaagcacgtgtggtgtgggatcaccaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||    
T  30016583 ccaaactcatgcaacgtcctcacaaactaccacctctacta------------gggaaaacaaaaccacatttaagcacgtgtggtgtgggatcaccaca 30016496  T
Q  118 cctcatcattttccaccactatttttagcattggctaccaccattaaaataaatatgatattatctatatctctacaaatataacctctannnnnnnacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||     
T  30016495 cctcatcattttccaccactatttttagcattggctaccaccattaaaataaatatgatattatctatatctctacaaatataacctctatttttttact 30016396  T
Q  218 cagattaggtttattaatttgtcttatttcattgttactattttactcttaatttgttacaaagtttccctacatcttatagtcaattattttcggtttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  30016395 cagattaggtttattaatttgtcttatttcattgttactattttactcttaatttgttacaaagtttccctacatcttatagtaaattgttttcggtttt 30016296  T
Q  318 attagttaaattataatcaattaaaattcatagataagatatatattgactggataatcttttatactattggacaaatatcatgcaattggttttgtgg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30016295 attagttaaattataatcaattaaaattcatagataagatatatattgattggataatcttttatactattggacaaatatcatgcaattggttttgtgg 30016196  T
Q  418 gaaagtaggaattttcatcgttactttggtaattttatagtgattaatttttctcctatataaatgttaggaag----ccatgtgtttgaatttgaaggt 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     ||||||||||| |||||| ||    
T  30016195 gaaagtaggaattttcatcgttactttggtaattttatagtgattaatttttctcctatataaatgttagcaagagatacatgtgtttgagtttgaatgt 30016096  T
Q  514 cccctttttcaaatttgaatacgttcttcctaaaataatgaacaaaaaatttaatcaatccgatgggaatgaaattgaggatctaatg------------ 601  Q
    ||||||||||||| |||||||| ||||||||       |||||||||||||||||     ||||||||||||||||||||||||||||                
T  30016095 cccctttttcaaacttgaatactttcttcct-------tgaacaaaaaatttaat-----cgatgggaatgaaattgaggatctaatgtcgttgtgttat 30016008  T
Q  602 ---gtgtgttttctgcatctgagcctc-atttcattcccattgatctcacatttataagttggagctttgacattagcttttgtg 682  Q
       ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30016007 gtcgtgtgttttctacatctgagcctcaatttcattcccattgatctcacatttataagttggagctttgacattagcttttgtg 30015923  T

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