View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_high_21 (Length: 481)

Name: NF21163_high_21
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_high_21
NF21163_high_21
[»] chr1 (3 HSPs)
chr1 (60-466)||(7203349-7203752)
chr1 (27-60)||(2637187-2637220)
chr1 (30-66)||(18237091-18237127)
[»] chr8 (4 HSPs)
chr8 (30-66)||(33980462-33980498)
chr8 (30-66)||(5774045-5774081)
chr8 (30-66)||(35179597-35179633)
chr8 (30-66)||(40784888-40784924)
[»] chr4 (5 HSPs)
chr4 (30-65)||(18882349-18882384)
chr4 (30-63)||(37639891-37639924)
chr4 (27-63)||(625967-626003)
chr4 (30-66)||(18003940-18003976)
chr4 (30-66)||(30050088-30050124)
[»] chr7 (2 HSPs)
chr7 (37-65)||(9140544-9140572)
chr7 (30-66)||(12930315-12930351)
[»] chr6 (1 HSPs)
chr6 (30-66)||(7772173-7772209)
[»] chr5 (1 HSPs)
chr5 (30-66)||(24857553-24857589)
[»] chr3 (1 HSPs)
chr3 (37-65)||(1111659-1111687)
[»] chr2 (1 HSPs)
chr2 (30-66)||(20643479-20643515)


Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 60 - 466
Target Start/End: Original strand, 7203349 - 7203752
Alignment:
Q  60 agtattaccgttataatgcttgtgagattaaatgtcttagttcggttgctacttgatttgtattaggtacattttattgacctcgatttaaagcggttga 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7203349 agtattaccgttataatgcttgtgagattaaatgtcttagttcggttgctacttgatttgtattaggtacattttattgacctcgatttaaagcggttga 7203448  T
Q  160 gtaaagtagaagactactacaagttagataagaagatagtgaactgttacaaagagatgggcagattggaccatggaagaaatggagatgcaaacttata 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||    
T  7203449 gtaaagtagaagactactacaagttagataagaagatagtgaactgttacaaagagatgagcaaattggatcatggaagaaatggagatgcaaacttata 7203548  T
Q  260 gggacctgaagttgcatgctgagatttcatagatttcttccttacaaaatgtttttgtgatagttgttaaaatgtgaagattcaacctgcataaatattt 359  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  7203549 gggacttgaagttgcatgctgagatttcatagatttcttccttacaaaatgtttttgtgata---gttaaaatgtgaagattcaacctgcataaatattt 7203645  T
Q  360 ggcttcacaacccaacgatcagnnnnnnncgtagactcggactattagaattcatcttttacataaatattttgtgtttgtattacataaagagtaacga 459  Q
    ||||||||||| ||||||||||        ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  7203646 ggcttcacaactcaacgatcagttttttttgtagactgggactatcagaattcatcttttacataaatattttgtgtttgtattacataatgagtaatga 7203745  T
Q  460 tatttgt 466  Q
    |||||||    
T  7203746 tatttgt 7203752  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 2637187 - 2637220
Alignment:
Q  27 ttccaaaaaagtcttataattagggacggagata 60  Q
    |||||||| |||||||||||||||||||||||||    
T  2637187 ttccaaaagagtcttataattagggacggagata 2637220  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 18237127 - 18237091
Alignment:
Q  30 caaaaaagtcttataattagggacggagatagtatta 66  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  18237127 caaaagagtcttataattagggacggaggtagtatta 18237091  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 33980498 - 33980462
Alignment:
Q  30 caaaaaagtcttataattagggacggagatagtatta 66  Q
    |||||||||||||||||||||||||||| ||||||||    
T  33980498 caaaaaagtcttataattagggacggaggtagtatta 33980462  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 5774081 - 5774045
Alignment:
Q  30 caaaaaagtcttataattagggacggagatagtatta 66  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  5774081 caaaagagtcttataattagggacggaggtagtatta 5774045  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 35179633 - 35179597
Alignment:
Q  30 caaaaaagtcttataattagggacggagatagtatta 66  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  35179633 caaaagagtcttataattagggacggaggtagtatta 35179597  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 40784924 - 40784888
Alignment:
Q  30 caaaaaagtcttataattagggacggagatagtatta 66  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  40784924 caaaaaggtcttataattagggacggaggtagtatta 40784888  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 18882384 - 18882349
Alignment:
Q  30 caaaaaagtcttataattagggacggagatagtatt 65  Q
    |||||| |||||||||||||||||||||||||||||    
T  18882384 caaaaaggtcttataattagggacggagatagtatt 18882349  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 37639891 - 37639924
Alignment:
Q  30 caaaaaagtcttataattagggacggagatagta 63  Q
    ||||| ||||||||||||||||||||||||||||    
T  37639891 caaaagagtcttataattagggacggagatagta 37639924  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 625967 - 626003
Alignment:
Q  27 ttccaaaaaagtcttataattagggacggagatagta 63  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  625967 ttccaaaaaggtcttataattagggacggaggtagta 626003  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 18003976 - 18003940
Alignment:
Q  30 caaaaaagtcttataattagggacggagatagtatta 66  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  18003976 caaaaaagtgttataattagggacggaggtagtatta 18003940  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 30050088 - 30050124
Alignment:
Q  30 caaaaaagtcttataattagggacggagatagtatta 66  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  30050088 caaaagagtcttataattagggacggaggtagtatta 30050124  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 9140544 - 9140572
Alignment:
Q  37 gtcttataattagggacggagatagtatt 65  Q
    |||||||||||||||||||||||||||||    
T  9140544 gtcttataattagggacggagatagtatt 9140572  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 12930351 - 12930315
Alignment:
Q  30 caaaaaagtcttataattagggacggagatagtatta 66  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  12930351 caaaagagtcttataattagggacggaggtagtatta 12930315  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 7772209 - 7772173
Alignment:
Q  30 caaaaaagtcttataattagggacggagatagtatta 66  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  7772209 caaaagagtcttataattagggacggaggtagtatta 7772173  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 24857589 - 24857553
Alignment:
Q  30 caaaaaagtcttataattagggacggagatagtatta 66  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  24857589 caaaagagtcttataattagggacggaggtagtatta 24857553  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 1111659 - 1111687
Alignment:
Q  37 gtcttataattagggacggagatagtatt 65  Q
    |||||||||||||||||||||||||||||    
T  1111659 gtcttataattagggacggagatagtatt 1111687  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 20643515 - 20643479
Alignment:
Q  30 caaaaaagtcttataattagggacggagatagtatta 66  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  20643515 caaaaaagtgttataattagggacggaggtagtatta 20643479  T

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