View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_24 (Length: 455)
Name: NF21163_high_24
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 11 - 449
Target Start/End: Original strand, 52546982 - 52547418
Alignment:
| Q |
11 |
cacagatccatgtgacagaaataaaacatatgttgaaaatttaatcataccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgtaccc |
110 |
Q |
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| T |
52546982 |
cacagattcatgtgacagaaataaaacatatgttgaaaatttaatcataccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgtaccc |
52547081 |
T |
|
| Q |
111 |
attgaactgatgaacttccacttacagtgggaagttttaaggtttcacccttgagaccaatctgaccagcaacaaaattgaaatggaatttcttaatgtt |
210 |
Q |
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| T |
52547082 |
attgaactgatgaacttccacttacagtgggaagttttaaggtttcacccttgagaccaatctgaccagcaacaaaattgaaatggaatttcttaatgtt |
52547181 |
T |
|
| Q |
211 |
gcattatttccgaaaagcgaaatcacatataaaaatgaatgatacacatataatgcttcaacacaaaaataaacaagaaattatattatgcttaaacatt |
310 |
Q |
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| T |
52547182 |
gcattatttccgaaaagcgaaatcacatataaaaatgaatgatacacatataatgcttcaacacaaaaataaacaagaaattatattatgcttaaacatt |
52547281 |
T |
|
| Q |
311 |
ttcttagtgatgacacaagtaagtatcaacaacatttttcgattttgaaaaacattgtgcaatgtttcttctaccaactgaaacattgctaggcaacaat |
410 |
Q |
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| T |
52547282 |
ttcttagtgatg--acaagtaagtatcaacaacatttttcgattttgaaaaacattgtgcaatgtttcttctaccaactgaaacattgctaggcaacaaa |
52547379 |
T |
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| Q |
411 |
ccttgtaagaccatttctgttgtgacaagtctctggtcc |
449 |
Q |
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| T |
52547380 |
ccttgtaagaccatttctgttgtgacaagtctctggtcc |
52547418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 5232788 - 5232740
Alignment:
| Q |
58 |
taccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgt |
106 |
Q |
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| T |
5232788 |
taccttgtaccatgtcaaaggttgttttttagccaatgatgatccttgt |
5232740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 17128727 - 17128594
Alignment:
| Q |
41 |
tgttgaaaatttaatcataccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgtacccattgaactgatgaacttccacttacagtgg |
140 |
Q |
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| T |
17128727 |
tgttgaaaactcattcttaccttgtaccatgtcaaaggttgttttttagataaaaatgatccttgtgtccatttaacagaagaacttccacttgtggtat |
17128628 |
T |
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| Q |
141 |
gaagttttaaggtttcacccttgagaccaatctg |
174 |
Q |
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| T |
17128627 |
gaaggtttaaggattcacctttcagtccaatctg |
17128594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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